Data

Larval dispersal in two common lineages of the coral Pocillopora damicornis on the Great Barrier Reef

Australian Ocean Data Network
Australian Institute of Marine Science (AIMS)
Viewed: [[ro.stat.viewed]] Cited: [[ro.stat.cited]] Accessed: [[ro.stat.accessed]]
ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=https://apps.aims.gov.au/metadata/view/22a7f3e0-19e8-4e99-a19b-7b81655a6ba5&rft.title=Larval dispersal in two common lineages of the coral Pocillopora damicornis on the Great Barrier Reef&rft.identifier=https://apps.aims.gov.au/metadata/view/22a7f3e0-19e8-4e99-a19b-7b81655a6ba5&rft.publisher=Australian Institute of Marine Science (AIMS)&rft.description=Coral recruits were sampled from 20 pre-conditioned, unglazed, terracotta tiles, deployed at each of four sites around Lizard Island in the Northern Great Barrier Reef (GBR), and four sites around Orpheus and Pelorus Islands in the Palm Islands group in the central GBR. Tiles were scattered haphazardly over an area approximately 100 m², at a depth of three to nine metres, and represented a total settlement surface area of 0.572 m². Tiles were recovered, sampled for coral recruits, cleaned and redeployed roughly every three months from May 2009 until May 2010 at Lizard Island sites, and every two months until May 2011 at Palm Islands sites. In February 2011, a category five tropical cyclone, TC Yasi, hit the Palm Islands and destroyed the windward sites (NE Orpheus and NE Pelorus). All tiles at these exposed sites were lost, thus the last sampling was in early December 2010.Each census and sampling of coral recruits was done under a dissecting microscope by systematically scanning all sides and edges of each tile. Pocilloporid recruits were identified visually. Recruits sampled were photographed, snapped off tiles using a scalpel and stored in absolute ethanol until genetic processing.DNA of coral recruits was extracted and samples were tested with a rapid genetic assay to distinguish Pocillopora damicornis from other pocilloporid recruits and to determine their respective lineage. Samples identified as Pocillopora damicornis Type alpha and beta were genotyped at nine microsatellite markers using themultiplex groups, primers and protocols described in (Torda et al. 2013).Measures of larval dispersal in two lineages of P. damicornis, Type alpha and beta (Schmidt-Roach et al. 2013) from the Great Barrier Reef were inferred by comparing microsatellite genotypes betweeb the recruits and adult populations on the GBR (Torda et al. in review: Revisiting the connectivity puzzle of the common coral Pocillopora damicornis). Individual-based population genetic statistics were used to compare genotypic data of recently settled coral recruits to those of adults in the same population, in order to overcome the issue of cumulative and multi-generational patterns of connectivity when adult populations are the only group considered.Maintenance and Update Frequency: notPlannedStatement: Statement: Deployment of terracotta tiles is described in:Mundy CN (2000) An appraisal of methods used in coral recruitment studies. Coral Reefs 19: 124-131.Pocilloporid recruits were identified visually according to descriptions in:Babcock RC, Baird AH, Piromvaragorn S, Thomson DP, Willis BL (2003) Identification of scleractinian coral recruits from Indo-Pacific reefs. Zoological Studies 42: 211-226.The protocol adapted to extract the DNA of coral recruits is described in:Gloor G, Engels WR (1992) Single-fly DNA preps for PCR. Drosophila Information Service 71: 148-149.The rapid genetic assay used to distinguish Ppcillopora damicornis from other pocilloporid recruits, as well as the microsatellite genotyping method are described in:Torda G, Schmidt-Roach S, Peplow LM, Lundgren P, van Oppen MJH (2013) A rapid genetic assay for the identification of the most common Pocillopora damicornis genetic lineages on the Great Barrier Reef. PLoS ONE 8: e58447.&rft.creator=Australian Institute of Marine Science (AIMS) &rft.date=2024&rft.coverage=westlimit=145.449; southlimit=-14.659; eastlimit=145.449; northlimit=-14.659&rft.coverage=westlimit=145.449; southlimit=-14.659; eastlimit=145.449; northlimit=-14.659&rft.coverage=westlimit=145.461; southlimit=-14.649; eastlimit=145.461; northlimit=-14.649&rft.coverage=westlimit=145.461; southlimit=-14.649; eastlimit=145.461; northlimit=-14.649&rft.coverage=westlimit=145.443; southlimit=-14.688; eastlimit=145.443; northlimit=-14.688&rft.coverage=westlimit=145.443; southlimit=-14.688; eastlimit=145.443; northlimit=-14.688&rft.coverage=westlimit=145.47; southlimit=-14.691; eastlimit=145.47; northlimit=-14.691&rft.coverage=westlimit=145.47; southlimit=-14.691; eastlimit=145.47; northlimit=-14.691&rft.coverage=westlimit=146.488; southlimit=-18.547; eastlimit=146.488; northlimit=-18.547&rft.coverage=westlimit=146.488; southlimit=-18.547; eastlimit=146.488; northlimit=-18.547&rft.coverage=westlimit=146.504; southlimit=-18.546; eastlimit=146.504; northlimit=-18.546&rft.coverage=westlimit=146.504; southlimit=-18.546; eastlimit=146.504; northlimit=-18.546&rft.coverage=westlimit=146.498; southlimit=-18.587; eastlimit=146.498; northlimit=-18.587&rft.coverage=westlimit=146.498; southlimit=-18.587; eastlimit=146.498; northlimit=-18.587&rft_rights= http://creativecommons.org/licenses/by/3.0/au/&rft_rights=http://i.creativecommons.org/l/by/3.0/au/88x31.png&rft_rights=WWW:LINK-1.0-http--related&rft_rights=License Graphic&rft_rights=Creative Commons Attribution 3.0 Australia License&rft_rights=http://creativecommons.org/international/au/&rft_rights=WWW:LINK-1.0-http--related&rft_rights=WWW:LINK-1.0-http--related&rft_rights=License Text&rft_rights=Use Limitation: All AIMS data, products and services are provided as is and AIMS does not warrant their fitness for a particular purpose or non-infringement. While AIMS has made every reasonable effort to ensure high quality of the data, products and services, to the extent permitted by law the data, products and services are provided without any warranties of any kind, either expressed or implied, including without limitation any implied warranties of title, merchantability, and fitness for a particular purpose or non-infringement. AIMS make no representation or warranty that the data, products and services are accurate, complete, reliable or current. To the extent permitted by law, AIMS exclude all liability to any person arising directly or indirectly from the use of the data, products and services.&rft_rights=Attribution: Format for citation of metadata sourced from Australian Institute of Marine Science (AIMS) in a list of reference is as follows: Australian Institute of Marine Science (AIMS). (2013). Larval dispersal in two common lineages of the coral Pocillopora damicornis on the Great Barrier Reef. https://apps.aims.gov.au/metadata/view/22a7f3e0-19e8-4e99-a19b-7b81655a6ba5, accessed[date-of-access].&rft_rights=Resource Usage:Security classification code: unclassifiedMetadata Usage:Access Constraint: intellectualPropertyRightsUse Constraint: intellectualPropertyRightsSecurity classification code: unclassified&rft_rights=Creative Commons Attribution 3.0 Australia License http://creativecommons.org/licenses/by/3.0/au&rft_subject=oceans&rft.type=dataset&rft.language=English Access the data

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Use Limitation: All AIMS data, products and services are provided "as is" and AIMS does not warrant their fitness for a particular purpose or non-infringement. While AIMS has made every reasonable effort to ensure high quality of the data, products and services, to the extent permitted by law the data, products and services are provided without any warranties of any kind, either expressed or implied, including without limitation any implied warranties of title, merchantability, and fitness for a particular purpose or non-infringement. AIMS make no representation or warranty that the data, products and services are accurate, complete, reliable or current. To the extent permitted by law, AIMS exclude all liability to any person arising directly or indirectly from the use of the data, products and services.

Attribution: Format for citation of metadata sourced from Australian Institute of Marine Science (AIMS) in a list of reference is as follows: "Australian Institute of Marine Science (AIMS). (2013). Larval dispersal in two common lineages of the coral Pocillopora damicornis on the Great Barrier Reef. https://apps.aims.gov.au/metadata/view/22a7f3e0-19e8-4e99-a19b-7b81655a6ba5, accessed[date-of-access]".

Resource Usage:Security classification code: unclassifiedMetadata Usage:Access Constraint: intellectualPropertyRightsUse Constraint: intellectualPropertyRightsSecurity classification code: unclassified

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Brief description

Coral recruits were sampled from 20 pre-conditioned, unglazed, terracotta tiles, deployed at each of four sites around Lizard Island in the Northern Great Barrier Reef (GBR), and four sites around Orpheus and Pelorus Islands in the Palm Islands group in the central GBR. Tiles were scattered haphazardly over an area approximately 100 m², at a depth of three to nine metres, and represented a total settlement surface area of 0.572 m². Tiles were recovered, sampled for coral recruits, cleaned and redeployed roughly every three months from May 2009 until May 2010 at Lizard Island sites, and every two months until May 2011 at Palm Islands sites. In February 2011, a category five tropical cyclone, TC Yasi, hit the Palm Islands and destroyed the windward sites (NE Orpheus and NE Pelorus). All tiles at these exposed sites were lost, thus the last sampling was in early December 2010.Each census and sampling of coral recruits was done under a dissecting microscope by systematically scanning all sides and edges of each tile. Pocilloporid recruits were identified visually. Recruits sampled were photographed, snapped off tiles using a scalpel and stored in absolute ethanol until genetic processing.DNA of coral recruits was extracted and samples were tested with a rapid genetic assay to distinguish Pocillopora damicornis from other pocilloporid recruits and to determine their respective lineage. Samples identified as Pocillopora damicornis Type alpha and beta were genotyped at nine microsatellite markers using themultiplex groups, primers and protocols described in (Torda et al. 2013).Measures of larval dispersal in two lineages of P. damicornis, Type alpha and beta (Schmidt-Roach et al. 2013) from the Great Barrier Reef were inferred by comparing microsatellite genotypes betweeb the recruits and adult populations on the GBR (Torda et al. in review: Revisiting the connectivity puzzle of the common coral Pocillopora damicornis). Individual-based population genetic statistics were used to compare genotypic data of recently settled coral recruits to those of adults in the same population, in order to overcome the issue of cumulative and multi-generational patterns of connectivity when adult populations are the only group considered.

Lineage

Maintenance and Update Frequency: notPlanned
Statement: Statement: Deployment of terracotta tiles is described in:Mundy CN (2000) An appraisal of methods used in coral recruitment studies. Coral Reefs 19: 124-131.Pocilloporid recruits were identified visually according to descriptions in:Babcock RC, Baird AH, Piromvaragorn S, Thomson DP, Willis BL (2003) Identification of scleractinian coral recruits from Indo-Pacific reefs. Zoological Studies 42: 211-226.The protocol adapted to extract the DNA of coral recruits is described in:Gloor G, Engels WR (1992) Single-fly DNA preps for PCR. Drosophila Information Service 71: 148-149.The rapid genetic assay used to distinguish Ppcillopora damicornis from other pocilloporid recruits, as well as the microsatellite genotyping method are described in:Torda G, Schmidt-Roach S, Peplow LM, Lundgren P, van Oppen MJH (2013) A rapid genetic assay for the identification of the most common Pocillopora damicornis genetic lineages on the Great Barrier Reef. PLoS ONE 8: e58447.

Notes

Credit
Torda, Gergely, Dr (Principal Investigator)

Modified: 09 08 2024

This dataset is part of a larger collection

Click to explore relationships graph

145.449,-14.659

145.449,-14.659

145.461,-14.649

145.461,-14.649

145.443,-14.688

145.443,-14.688

145.47,-14.691

145.47,-14.691

146.488,-18.547

146.488,-18.547

146.504,-18.546

146.504,-18.546

146.498,-18.587

146.498,-18.587

text: westlimit=145.449; southlimit=-14.659; eastlimit=145.449; northlimit=-14.659

text: westlimit=145.461; southlimit=-14.649; eastlimit=145.461; northlimit=-14.649

text: westlimit=145.443; southlimit=-14.688; eastlimit=145.443; northlimit=-14.688

text: westlimit=145.47; southlimit=-14.691; eastlimit=145.47; northlimit=-14.691

text: westlimit=146.488; southlimit=-18.547; eastlimit=146.488; northlimit=-18.547

text: westlimit=146.504; southlimit=-18.546; eastlimit=146.504; northlimit=-18.546

text: westlimit=146.498; southlimit=-18.587; eastlimit=146.498; northlimit=-18.587

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oceans |

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Identifiers
  • global : 22a7f3e0-19e8-4e99-a19b-7b81655a6ba5