Data

IMOS - AusCPR: Phytoplankton Abundance

Australian Ocean Data Network
Integrated Marine Observing System (IMOS)
Viewed: [[ro.stat.viewed]] Cited: [[ro.stat.cited]] Accessed: [[ro.stat.accessed]]
ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=https://catalogue-imos.aodn.org.au:443/geonetwork/srv/api/records/c1344979-f701-0916-e044-00144f7bc0f4&rft.title=IMOS - AusCPR: Phytoplankton Abundance&rft.identifier=https://catalogue-imos.aodn.org.au:443/geonetwork/srv/api/records/c1344979-f701-0916-e044-00144f7bc0f4&rft.description=The Australian Continuous Plankton Recorder (AusCPR) survey is a joint project of CSIRO Oceans and Atmosphere (O&A) and the Australian Antarctic Division (AAD) to measure plankton communities as a guide to the health of Australia's oceans. The phytoplankton abundance data are analysed as per Richardson et al 2006. Phytoplankton are usually counted from water samples after settling but in the CPR analysis we count the phytoplankton in situ. With CPR samples, the phytoplankton is captured by the mesh and are caught by the silk strands, by phytoplankton mucilage, and/or by other organisms on the silk. It is thus possible to see the phytoplankton cells directly on the mesh. In essence, the phytoplankton is already concentrated. Washing the phytoplankton off the silks to count in the standard manner may result in loss of or damage to cells before analysis. The aims of the AusCPR survey are to: * map plankton biodiversity and distribution * develop the first long-term plankton baseline for Australian waters * document plankton changes in response to climate change * provide indices for fisheries management * detect harmful algal blooms * validate satellite remote sensing * initialise and test ecosystem models. Servicing and maintenance of the CPRs and analysis of the samples for the AusCPR survey will be carried out by staff based at the O&A laboratories in Queensland and at the AAD in Hobart. The project was funded by the Integrated Marine Observing System (IMOS) and falls with the Ships of Opportunity facility. Data storage and access is planned to be interoperable with other national and international programs through the IMOS Infrastructure. Results from the AusCPR survey are available through the AODN portal: https://portal.aodn.org.au. This data is freely available but please acknowledge all relevant parties, as detailed in acknowledgement section. Source: https://marlin.csiro.au/geonetwork/srv/eng/catalog.search#/metadata/c1344979-f701-0916-e044-00144f7bc0f4. For information on using the data please refer to Richardson et al. 2006. It is advised that anyone using the data should read this methodology or contact the project contact person. The data are made available in binned products for ease of use. As taxonomy changes over time and the ability of analysts improves with training more and more species are able to be identified over time. The products account for these changes and for real absences from the samples. A 0 abundance means that the species was looked for and not seen, -999 means that the species was not looked for in that sample. The products are therefore applicable for use in time series analysis. There are 5 products to choose from: Raw product (includes all data); Species product (includes all data where species have been identified); Genus product (includes all data binned to genus level); Higher taxonomic group (includes all data binned to functional groups); Derived CPR Indices. The raw product contains the same information as the raw flat table form, but the absences have been added in and the taxonomic changes have been accounted for, for ease of use. Note: the binned and pivoted products described are currently only available by contacting imos-plankton@csiro.au. The latest raw data can be downloaded in flat table form (separate row for each taxon in each sample) on Step 3. **All files are available in bio-volume instead of abundance on request.** **This dataset has been superseded by the IMOS - Phytoplankton Abundance and Biovolume (CPR) collection that is available at https://catalogue-imos.aodn.org.au/geonetwork/srv/api/records/8e594cd1-363a-4b58-b741-9fa3624adb77 (this collection was removed from the AODN Portal in March 2022).**Maintenance and Update Frequency: asNeededStatement: Data sampling is being conducted as part of a larger IMOS monitoring program. The silk is removed from the CPR cassette and processed as described in Richardson et al 2006. The phytoplankton colour index (PCI) and the phytoplankton data are also analysed as per Richardson et al 2006. The zooplankton analysis is conducted differently to that described in Richardson et al 2006 as it is counted off the silk in a bogorov tray. This is accomplished by rinsing the silks in water and straining through a 10 micron mesh sieve. The collected plankton is transferred to a bogorov tray and counted under a disecting scope. This is done to retain the phytoplankton. AusCPR decided to analyse the zooplankton this way as it provides a more accurate analysis of the zooplankton present. It is easy to miss zooplankton when it is still on the silk and it is harder to identify. After counting the zooplankton and phytoplankton are transferred onto a preweighed filter and dried in an oven at 60 degrees C for 24-48 hours. Once dried the sample is reweighed to attain dry weight.Statement: ATTRIBUTE STATEMENT: Route_Code - Unique code for the sampling route (Start/End Port) Longitude - Longitude of sample (Decimal degrees, WSG84 datum) Latitude - Latitude of sample (Decimal degrees, WSG84 datum) Sample_date_UTC - Time of sample (Coordinated Universal Time) Species / Genus / Higher taxonomic group - Phytoplankton taxonomic species information Taxon_Per_m3 - Derived estimate of phytoplankton abundance (number per cubic metre)Statement: Originally this collection only provided the raw data in flat table form (with each species recorded in a separate row). When the analysis-ready products were first published (on 21/12/2018), the flat tables were removed as they were considered obsolete. Since the products are now out of date (last updated August 2019), on 2/11/2020 the flat tables were made available again, and are updated weekly with the latest data. 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129,-35.999999999999986&rft.coverage=136,-35.999999999999986 136,-37 137,-37 137,-35.999999999999986 136,-35.999999999999986&rft.coverage=uplimit=-5; downlimit=-10&rft.coverage=uplimit=-5; downlimit=-10&rft_rights= http://creativecommons.org/licenses/by/4.0/&rft_rights=http://i.creativecommons.org/l/by/4.0/88x31.png&rft_rights=WWW:LINK-1.0-http--related&rft_rights=License Graphic&rft_rights=Creative Commons Attribution 4.0 International License&rft_rights=http://creativecommons.org/international/&rft_rights=WWW:LINK-1.0-http--related&rft_rights=WWW:LINK-1.0-http--related&rft_rights=License Text&rft_rights=The citation in a list of references is: IMOS [year-of-data-download], [Title], [data-access-URL], accessed [date-of-access]. Any users of IMOS data are required to clearly acknowledge the source of the material derived from IMOS in the format: Data was sourced from Australia’s Integrated Marine Observing System (IMOS) – IMOS is enabled by the National Collaborative Research Infrastructure strategy (NCRIS).&rft_rights=Creative Commons Attribution 4.0 International License http://creativecommons.org/licenses/by/4.0&rft_subject=biota&rft_subject=ORGANIC MATTER&rft_subject=EARTH SCIENCE&rft_subject=OCEANS&rft_subject=OCEAN CHEMISTRY&rft_subject=WATER TEMPERATURE&rft_subject=OCEAN TEMPERATURE&rft_subject=SALINITY&rft_subject=SALINITY/DENSITY&rft_subject=Global / Oceans | Southern Ocean&rft_subject=Global / Oceans | Indian Ocean&rft_subject=Global / Oceans | Pacific Ocean&rft_subject=Marine Features (Australia) | Great Australian Bight, SA/WA&rft_subject=Marine Features (Australia) | Bass Strait, TAS/VIC&rft_subject=Regional Seas | Coral Sea&rft_subject=Regional Seas | Tasman Sea&rft_subject=Countries | Australia&rft_subject=Continents | Antarctica&rft_subject=Countries | New Zealand&rft_subject=States, Territories (Australia) | Western Australia&rft_subject=States, Territories (Australia) | South Australia&rft_subject=States, Territories (Australia) | Victoria&rft_subject=States, Territories (Australia) | New South Wales&rft_subject=States, Territories (Australia) | Tasmania&rft_subject=States, Territories (Australia) | Queensland&rft_subject=vessel of opportunity&rft_subject=Abundance of biota&rft_subject=Biotic taxonomic identification&rft_subject=plankton recorders&rft_subject=Australian Plankton Survey Sub-Facility, Integrated Marine Observing System (IMOS)&rft.type=dataset&rft.language=English Access the data
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The citation in a list of references is: "IMOS [year-of-data-download], [Title], [data-access-URL], accessed [date-of-access]." Any users of IMOS data are required to clearly acknowledge the source of the material derived from IMOS in the format: "Data was sourced from Australia’s Integrated Marine Observing System (IMOS) – IMOS is enabled by the National Collaborative Research Infrastructure strategy (NCRIS)."

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Brief description

The Australian Continuous Plankton Recorder (AusCPR) survey is a joint project of CSIRO Oceans and Atmosphere (O&A) and the Australian Antarctic Division (AAD) to measure plankton communities as a guide to the health of Australia's oceans. The phytoplankton abundance data are analysed as per Richardson et al 2006. Phytoplankton are usually counted from water samples after settling but in the CPR analysis we count the phytoplankton in situ. With CPR samples, the phytoplankton is captured by the mesh and are caught by the silk strands, by phytoplankton mucilage, and/or by other organisms on the silk. It is thus possible to see the phytoplankton cells directly on the mesh. In essence, the phytoplankton is already concentrated. Washing the phytoplankton off the silks to count in the standard manner may result in loss of or damage to cells before analysis. The aims of the AusCPR survey are to: * map plankton biodiversity and distribution * develop the first long-term plankton baseline for Australian waters * document plankton changes in response to climate change * provide indices for fisheries management * detect harmful algal blooms * validate satellite remote sensing * initialise and test ecosystem models. Servicing and maintenance of the CPRs and analysis of the samples for the AusCPR survey will be carried out by staff based at the O&A laboratories in Queensland and at the AAD in Hobart. The project was funded by the Integrated Marine Observing System (IMOS) and falls with the Ships of Opportunity facility. Data storage and access is planned to be interoperable with other national and international programs through the IMOS Infrastructure. Results from the AusCPR survey are available through the AODN portal: https://portal.aodn.org.au. This data is freely available but please acknowledge all relevant parties, as detailed in acknowledgement section. Source: https://marlin.csiro.au/geonetwork/srv/eng/catalog.search#/metadata/c1344979-f701-0916-e044-00144f7bc0f4. For information on using the data please refer to Richardson et al. 2006. It is advised that anyone using the data should read this methodology or contact the project contact person. The data are made available in binned products for ease of use. As taxonomy changes over time and the ability of analysts improves with training more and more species are able to be identified over time. The products account for these changes and for real absences from the samples. A 0 abundance means that the species was looked for and not seen, -999 means that the species was not looked for in that sample. The products are therefore applicable for use in time series analysis. There are 5 products to choose from: Raw product (includes all data); Species product (includes all data where species have been identified); Genus product (includes all data binned to genus level); Higher taxonomic group (includes all data binned to functional groups); Derived CPR Indices. The raw product contains the same information as the raw "flat table" form, but the absences have been added in and the taxonomic changes have been accounted for, for ease of use. Note: the binned and pivoted products described are currently only available by contacting imos-plankton@csiro.au. The latest raw data can be downloaded in "flat table" form (separate row for each taxon in each sample) on Step 3. **All files are available in bio-volume instead of abundance on request.** **This dataset has been superseded by the "IMOS - Phytoplankton Abundance and Biovolume (CPR)" collection that is available at https://catalogue-imos.aodn.org.au/geonetwork/srv/api/records/8e594cd1-363a-4b58-b741-9fa3624adb77 (this collection was removed from the AODN Portal in March 2022).**

Lineage

Maintenance and Update Frequency: asNeeded
Statement: Data sampling is being conducted as part of a larger IMOS monitoring program. The silk is removed from the CPR cassette and processed as described in Richardson et al 2006. The phytoplankton colour index (PCI) and the phytoplankton data are also analysed as per Richardson et al 2006. The zooplankton analysis is conducted differently to that described in Richardson et al 2006 as it is counted off the silk in a bogorov tray. This is accomplished by rinsing the silks in water and straining through a 10 micron mesh sieve. The collected plankton is transferred to a bogorov tray and counted under a disecting scope. This is done to retain the phytoplankton. AusCPR decided to analyse the zooplankton this way as it provides a more accurate analysis of the zooplankton present. It is easy to miss zooplankton when it is still on the silk and it is harder to identify. After counting the zooplankton and phytoplankton are transferred onto a preweighed filter and dried in an oven at 60 degrees C for 24-48 hours. Once dried the sample is reweighed to attain dry weight.
Statement: ATTRIBUTE STATEMENT: Route_Code - Unique code for the sampling route (Start/End Port) Longitude - Longitude of sample (Decimal degrees, WSG84 datum) Latitude - Latitude of sample (Decimal degrees, WSG84 datum) Sample_date_UTC - Time of sample (Coordinated Universal Time) Species / Genus / Higher taxonomic group - Phytoplankton taxonomic species information Taxon_Per_m3 - Derived estimate of phytoplankton abundance (number per cubic metre)
Statement: Originally this collection only provided the raw data in flat table form (with each species recorded in a separate row). When the "analysis-ready" products were first published (on 21/12/2018), the flat tables were removed as they were considered obsolete. Since the products are now out of date (last updated August 2019), on 2/11/2020 the flat tables were made available again, and are updated weekly with the latest data. In April 2021, access to the products were removed from this collection.

Notes

Credit
These data are from the Australian Continuous Plankton Recorder (AusCPR) survey part of the Australia’s Integrated Marine Observing System (IMOS) is enabled by the National Collaborative Research Infrastructure Strategy (NCRIS). It is operated by a consortium of institutions as an unincorporated joint venture, with the University of Tasmania as Lead Agent. Please also acknowledge the relevant party that helped to collect the data. This information is contained in the download of the zooplankton abundance. ANL - ANL Windarra container shipping CSIRO - Commonwealth Scientific and Industrial Research Organisation MNF - Marine National Facility Sealord Group Ltd. SOCPR - Southern Ocean Continuous Plankton Recorder Survey AIMS - Australian Institute of Marine Science GA - Geoscience Australia Swire Shipping Malaspina Cruise - March 2011 aboard vessel Hesprides
Credit
A. Richardson
Credit
F. Coman
Credit
C. Davies
Credit
J. McLaughlin
Credit
D. McLeod
Credit
A. Slotwinski
Credit
J. Strzelecki
Credit
M. Tonks
Credit
F. Laeisz
Credit
Wallenius Wilhelmsen
Credit
Rio Tinto Marine

Created: 06 2008

Data time period: 2008-06

This dataset is part of a larger collection

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131,-42

93,-63 96,-63 96,-62 93,-62 93,-63

94.5,-62.5

96,-62 98,-62 98,-61 96,-61 96,-62

97,-61.5

152,-22 152,-23 153,-23 153,-22 152,-22

152.5,-22.5

151,-42 151,-41 149,-41 149,-42 151,-42

150,-41.5

137,-51 137,-52 139,-52 139,-51 141,-51 141,-52 142,-52 142,-51 145,-51 145,-50 146,-50 146,-49 147,-49 147,-47 145,-47 145,-49 143,-49 143,-48 141,-48 141,-49 140,-49 140,-50 138,-50 138,-51 137,-51

142,-49.5

137,-52 136,-52 136,-53 137,-53 137,-52

136.5,-52.5

136,-53 134,-53 134,-54 133,-54 133,-55 135,-55 135,-54 136,-54 136,-53

134.5,-54

133,-55 131,-55 131,-56 133,-56 133,-55

132,-55.5

139,-52 139,-53 140,-53 140,-52 139,-52

139.5,-52.5

127,-54 127,-55 129,-55 129,-54 127,-54

128,-54.5

129,-54 130,-54 130,-53 129,-53 129,-54

129.5,-53.5

130,-53 132,-53 132,-52 130,-52 130,-53

131,-52.5

133,-51 133,-52 134,-52 134,-51 133,-51

133.5,-51.5

114,-60 116,-60 116,-59 117,-59 117,-58 114,-58 114,-60

115.5,-59

126,-58 127,-58 127,-57 126,-57 126,-58

126.5,-57.5

130,-58 130,-59 129,-59 129,-60 131,-60 131,-59 135,-59 135,-58 137,-58 137,-57 139,-57 139,-56 140,-56 140,-54 139,-54 139,-55 137,-55 137,-56 134,-56 134,-57 132,-57 132,-58 130,-58

134.5,-57

104,-58 105,-58 105,-57 108,-57 108,-56 104,-56 104,-58

106,-57

122,-58 121,-58 121,-59 122,-59 122,-58

121.5,-58.5

103,-61 103,-62 113,-62 113,-61 111,-61 111,-60 109,-60 109,-61 108,-61 108,-60 107,-60 107,-61 103,-61

108,-61

124,-60 124,-61 125,-61 125,-60 124,-60

124.5,-60.5

99,-63 101,-63 101,-62 99,-62 99,-63

100,-62.5

115,-57 115,-56 114,-56 114,-57 115,-57

114.5,-56.5

113,-54 113,-55 114,-55 114,-54 113,-54

113.5,-54.5

116,-54 117,-54 117,-53 116,-53 116,-54

116.5,-53.5

109,-56 112,-56 112,-55 109,-55 109,-56

110.5,-55.5

128,-57 129,-57 129,-56 128,-56 128,-57

128.5,-56.5

117,-56 118,-56 118,-55 117,-55 117,-56

117.5,-55.5

124,-54 124,-53 123,-53 123,-54 124,-54

123.5,-53.5

125,-52 125,-53 126,-53 126,-52 125,-52

125.5,-52.5

141,-39 141,-40 142,-40 142,-41 143,-41 143,-39 141,-39

142,-40

144,-39 144,-41 145,-41 145,-43 148,-43 148,-40 145,-40 145,-39 144,-39

146,-41

129,-36 129,-37 132,-37 132,-36 129,-36

130.5,-36.5

136,-36 136,-37 137,-37 137,-36 136,-36

136.5,-36.5

text: uplimit=-5; downlimit=-10

Subjects
Abundance of biota | Australian Plankton Survey Sub-Facility, Integrated Marine Observing System (IMOS) | Biotic taxonomic identification | Continents | Antarctica | Countries | Australia | Countries | New Zealand | EARTH SCIENCE | Global / Oceans | Indian Ocean | Global / Oceans | Pacific Ocean | Global / Oceans | Southern Ocean | Marine Features (Australia) | Bass Strait, TAS/VIC | Marine Features (Australia) | Great Australian Bight, SA/WA | OCEAN CHEMISTRY | OCEAN TEMPERATURE | OCEANS | Organic Matter | Regional Seas | Coral Sea | Regional Seas | Tasman Sea | Salinity | SALINITY/DENSITY | States, Territories (Australia) | New South Wales | States, Territories (Australia) | Queensland | States, Territories (Australia) | South Australia | States, Territories (Australia) | Tasmania | States, Territories (Australia) | Victoria | States, Territories (Australia) | Western Australia | Water Temperature | biota | plankton recorders | vessel of opportunity |

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Other Information
Australian Continuous Plankton Recorder (AusCPR) Project - Home Page

uri : http://imos.org.au/auscontinuousplanktonrecorder.html

Link to Continuous Plankton Recorder (AusCPR) Sub-Facility metadata record (Link to SOOP Continuous Plankton Recorder (AusCPR) Sub-Facility metadata record)

uri : https://catalogue-imos.aodn.org.au:443/geonetwork/srv/api/records/c017bda3-8a03-4b41-8a07-c34c41bda1f0

(Contact imos-plankton@csiro.au to request updated data products)

local : mailto:imos-plankton@csiro.au

global : c017bda3-8a03-4b41-8a07-c34c41bda1f0

Identifiers
  • global : c1344979-f701-0916-e044-00144f7bc0f4
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