Data

How groundwater abstraction impacts groundwater ecosystems

Macquarie University
Grant Hose (Aggregated by) Kathryn Korbel (Aggregated by) TESS NELSON (Aggregated by)
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.25949/28267148.v1&rft.title=How groundwater abstraction impacts groundwater ecosystems&rft.identifier=https://doi.org/10.25949/28267148.v1&rft.publisher=Macquarie University&rft.description=Groundwater pump test - see Methods -- Read me.txt file for data collection methods.Microbial assemblage data derived from Illumina sequencing of 16S rDNA amplicons. Sequence data were processed using Greenfield Hybrid Analysis Pipeline (GHAP) v2.2, created by CSIRO Australia (available at https://cloudstor.aarnet.edu.au/plus/s/ pUvwME6fMeCcX - zL). Taxonomic assignment is based on the Ribosomal Database Project (RDP) Classifier (Wang, Garrity et al. 2007). OTUs were assigned using a 97% similarity threshold). Low abundant OTUs (&rft.creator=Grant Hose&rft.creator=Kathryn Korbel&rft.creator=TESS NELSON&rft.date=2025&rft_rights=CC-BY&rft_subject=microbial communities&rft_subject=groundwater ecosystem&rft_subject=Metabarcoding 16s RNA&rft_subject=groundwater abstraction&rft_subject=Freshwater ecology&rft_subject=Ecosystem function&rft.type=dataset&rft.language=English Access the data
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Groundwater pump test - see Methods -- Read me.txt file for data collection methods.


Microbial assemblage data derived from Illumina sequencing of 16S rDNA amplicons. Sequence data were processed using Greenfield Hybrid Analysis Pipeline (GHAP) v2.2, created by CSIRO Australia (available at https://cloudstor.aarnet.edu.au/plus/s/ pUvwME6fMeCcX - zL). Taxonomic assignment is based on the Ribosomal Database Project (RDP) Classifier (Wang, Garrity et al. 2007). OTUs were assigned using a 97% similarity threshold). Low abundant OTUs (<10), organelles and unassigned taxa at kingdom level were removed.

Issued: 2025-01-29

Created: 2025-01-29

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Ecosystem function | Freshwater ecology | Metabarcoding 16s RNA | groundwater abstraction | groundwater ecosystem | microbial communities |

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