Data

High-throughput eDNA monitoring of fungi to track functional recovery in ecological restoration: OTU raw data matrix

Advanced Ecological Knowledge and Observation System
Gellie, NJC ; Yan, D ; Mills, JG ; Lowe, AJ ; Breed, MF
Viewed: [[ro.stat.viewed]] Cited: [[ro.stat.cited]] Accessed: [[ro.stat.accessed]]
ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.4227/05/58ca32e5ef782&rft.title=High-throughput eDNA monitoring of fungi to track functional recovery in ecological restoration: OTU raw data matrix&rft.identifier=http://doi.org/10.4227/05/58ca32e5ef782&rft.publisher=ÆKOS Data Portal, rights owned by University of Adelaide&rft.description=We generated a total of 4,993,144 ITS fungal raw reads (118,884 ± 42,210 SD per replicate) across the 42 replicates. A total of 4,955,680 fungal sequences (117,430 ± 42,164 SD per replicate) remained for further analysis after quality filtering&rft.creator=Anonymous&rft.date=2017&rft.edition=1.0&rft.coverage=Our study system was an active restoration site at Mt Bold, a water catchment reserve of the Mt Lofty Ranges in South Australia (35.07;S, 138.42 E). This catchment was dominated by an open eucalypt woodland that has historically been subjected to tree clearance and grazing that began early in the 20th century. In this context, the native understory and most of the overstory was cleared and replaced by a grassland dominated by introduced grasses. At our study site, grazing ceased in 2003 when South Australia’s water utility (SA Water) took over management. SA Water has actively restored the study site since 2005, with the restoration goal of recreating the local Eucalyptus leucoxylon dominated grassy woodland community.&rft.coverage=northlimit=-35.08540; southlimit=-35.10306; eastlimit=138.68512; westlimit=138.65032; projection=GDA94&rft_rights=(C)2017 University of Adelaide. Rights owned by University of Adelaide. Rights licensed subject to Creative Commons Attribution 4.0 International.&rft_rights=Creative Commons Attribution 4.0 International&rft_subject=ECOLOGICAL APPLICATIONS&rft_subject=ENVIRONMENTAL SCIENCES&rft_subject=Terrestrial Ecology&rft_subject=BIOLOGICAL SCIENCES&rft_subject=ECOLOGY&rft_subject=Conservation and Biodiversity&rft_subject=ENVIRONMENTAL SCIENCE AND MANAGEMENT&rft_subject=Wildlife and Habitat Management&rft_subject=GENETICS&rft_subject=MICROBIOLOGY&rft_subject=OTHER BIOLOGICAL SCIENCES&rft_subject=PLANT BIOLOGY&rft_subject=SOIL SCIENCES&rft_subject=ECOSYSTEM ASSESSMENT AND MANAGEMENT&rft_subject=ENVIRONMENT&rft_subject=ENVIRONMENTAL AND NATURAL RESOURCE EVALUATION&rft_subject=Flora, Fauna and Biodiversity at Regional or Larger Scales&rft_subject=FLORA, FAUNA AND BIODIVERSITY&rft_subject=LAND AND WATER MANAGEMENT&rft_subject=REHABILITATION OF DEGRADED ENVIRONMENTS&rft_subject=SOILS&rft_subject=Biodiversity Inventory&rft_subject=Ecological Succession&rft_subject=Experimental Ecology&rft_subject=Landscape Ecology&rft_subject=Long-Term Community Monitoring&rft_subject=Long-Term Species Monitoring&rft_subject=Molecular Ecology&rft_subject=Restoration Ecology&rft_subject=Soil Ecology&rft_subject=Land-use change&rft_subject=Habitat Restoration&rft.type=dataset&rft.language=English ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.4227/05/58ca32e5ef782&rft.title=High-throughput eDNA monitoring of fungi to track functional recovery in ecological restoration: OTU raw data matrix&rft.identifier=http://doi.org/10.4227/05/58ca32e5ef782&rft.publisher=ÆKOS Data Portal, rights owned by University of Adelaide&rft.description=We generated a total of 4,993,144 ITS fungal raw reads (118,884 ± 42,210 SD per replicate) across the 42 replicates. A total of 4,955,680 fungal sequences (117,430 ± 42,164 SD per replicate) remained for further analysis after quality filtering&rft.creator=Anonymous&rft.date=2017&rft.edition=1.0&rft.coverage=Our study system was an active restoration site at Mt Bold, a water catchment reserve of the Mt Lofty Ranges in South Australia (35.07;S, 138.42 E). This catchment was dominated by an open eucalypt woodland that has historically been subjected to tree clearance and grazing that began early in the 20th century. In this context, the native understory and most of the overstory was cleared and replaced by a grassland dominated by introduced grasses. At our study site, grazing ceased in 2003 when South Australia’s water utility (SA Water) took over management. SA Water has actively restored the study site since 2005, with the restoration goal of recreating the local Eucalyptus leucoxylon dominated grassy woodland community.&rft.coverage=northlimit=-35.08540; southlimit=-35.10306; eastlimit=138.68512; westlimit=138.65032; projection=GDA94&rft_rights=(C)2017 University of Adelaide. Rights owned by University of Adelaide. Rights licensed subject to Creative Commons Attribution 4.0 International.&rft_rights=Creative Commons Attribution 4.0 International&rft_subject=ECOLOGICAL APPLICATIONS&rft_subject=ENVIRONMENTAL SCIENCES&rft_subject=Terrestrial Ecology&rft_subject=BIOLOGICAL SCIENCES&rft_subject=ECOLOGY&rft_subject=Conservation and Biodiversity&rft_subject=ENVIRONMENTAL SCIENCE AND MANAGEMENT&rft_subject=Wildlife and Habitat Management&rft_subject=GENETICS&rft_subject=MICROBIOLOGY&rft_subject=OTHER BIOLOGICAL SCIENCES&rft_subject=PLANT BIOLOGY&rft_subject=SOIL SCIENCES&rft_subject=ECOSYSTEM ASSESSMENT AND MANAGEMENT&rft_subject=ENVIRONMENT&rft_subject=ENVIRONMENTAL AND NATURAL RESOURCE EVALUATION&rft_subject=Flora, Fauna and Biodiversity at Regional or Larger Scales&rft_subject=FLORA, FAUNA AND BIODIVERSITY&rft_subject=LAND AND WATER MANAGEMENT&rft_subject=REHABILITATION OF DEGRADED ENVIRONMENTS&rft_subject=SOILS&rft_subject=Biodiversity Inventory&rft_subject=Ecological Succession&rft_subject=Experimental Ecology&rft_subject=Landscape Ecology&rft_subject=Long-Term Community Monitoring&rft_subject=Long-Term Species Monitoring&rft_subject=Molecular Ecology&rft_subject=Restoration Ecology&rft_subject=Soil Ecology&rft_subject=Land-use change&rft_subject=Habitat Restoration&rft.type=dataset&rft.language=English Access the data
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Creative Commons Attribution 4.0 International

(C)2017 University of Adelaide. Rights owned by University of Adelaide. Rights licensed subject to Creative Commons Attribution 4.0 International.

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These data can be freely downloaded via the Advanced Ecological Knowledge and Observation System (ÆKOS) Data Portal and used subject to the Creative Commons Attribution 4.0 International. Attribution and citation is required as described under License and Citation. We ask you to send citations of publications arising from work that use these data to TERN Eco-informatics at datacited@aekos.org.au and citation and copies of publications to nick.gellie@adelaide.edu.au

Contact Information

Street Address:
Nicholas James Court Gellie
University of Adelaide
Biological Sciences, North Terrace, Adelaide 5005, South Australia
Ph: +61883137032

nick.gellie@adelaide.edu.au

Full description

We generated a total of 4,993,144 ITS fungal raw reads (118,884 ± 42,210 SD per replicate) across the 42 replicates. A total of 4,955,680 fungal sequences (117,430 ± 42,164 SD per replicate) remained for further analysis after quality filtering

Date Submitted : 2017-03-16

Date Accepted : 2017-03-16

Data time period: 2014-12-17 to 2014-12-18

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138.68512,-35.0854 138.68512,-35.10306 138.65032,-35.10306 138.65032,-35.0854 138.68512,-35.0854

138.66772,-35.09423

text: Our study system was an active restoration site at Mt Bold, a water catchment reserve of the Mt Lofty Ranges in South Australia (35.07;S, 138.42 E). This catchment was dominated by an open eucalypt woodland that has historically been subjected to tree clearance and grazing that began early in the 20th century. In this context, the native understory and most of the overstory was cleared and replaced by a grassland dominated by introduced grasses. At our study site, grazing ceased in 2003 when South Australia’s water utility (SA Water) took over management. SA Water has actively restored the study site since 2005, with the restoration goal of recreating the local Eucalyptus leucoxylon dominated grassy woodland community.

Subjects
Biological Sciences | Biodiversity Inventory | Conservation and Biodiversity | Ecological Applications | Ecology | Ecosystem Assessment and Management | Environment | Environmental and Natural Resource Evaluation | Environmental Science and Management | Environmental Sciences | Ecological Succession | Experimental Ecology | Flora, Fauna and Biodiversity | Flora, Fauna and Biodiversity at Regional or Larger Scales | Genetics | Habitat Restoration | Land and Water Management | Land-use change | Landscape Ecology | Long-Term Community Monitoring | Long-Term Species Monitoring | Microbiology | Molecular Ecology | Other Biological Sciences | Plant Biology | Rehabilitation of Degraded Environments | Restoration Ecology | Soil Sciences | Soils | Soil Ecology | Terrestrial Ecology | Wildlife and Habitat Management |

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Identifiers
  • Local : aekos.org.au/collection/shared/301447
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