Data

HaploMaker paper Files

Adelaide University
Fruzangohar, Mario
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.25909/12972761&rft.title=HaploMaker paper Files&rft.identifier=10.25909/12972761&rft.publisher=The University of Adelaide&rft.description=All vcf files required to run the commands:commonmerge.vcfNA12878_sorted.vcfNA12878_sorted_noheader.vcfNA12877_noheader.vcfHaploMaker Outputs:NA12877_10X_haplomaker.hapNA12877_25X_haplomaker.hapNA12878_hifi_haplomaker.hapNA12878_haplomaker_pacbio.hapHapCompass Outputs:NA12877_10X_hapcompass_q5.txtNA12877_25X_hapcompass_q3.txtWhatsHap outputs:NA12877_10X_whatshap_phased_q5.vcfNA12877_25X_whatshap_phased.vcfNA12878_hifi_whatshap.vcfNA12878_whatshap_pacbio.vcfHapcut2 outputs:NA12877_10X_hapcut2_q5.hapNA12877_25X_hapcut2.hapNA12878_hifi_hapcut2_pruned.hapNA12878_hapcut2_pruned_pacbio.hap&rft.creator=Fruzangohar, Mario &rft.edition=3&rft_rights= https://creativecommons.org/licenses/by-nd/4.0/&rft_subject=Bioinformatics and computational biology not elsewhere classified&rft_subject=haplotype blocks&rft_subject=Bioinformatics&rft.type=dataset&rft.language=English Access the data
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All vcf files required to run the commands:
commonmerge.vcf
NA12878_sorted.vcf
NA12878_sorted_noheader.vcf
NA12877_noheader.vcf

HaploMaker Outputs:
NA12877_10X_haplomaker.hap
NA12877_25X_haplomaker.hap
NA12878_hifi_haplomaker.hap
NA12878_haplomaker_pacbio.hap

HapCompass Outputs:
NA12877_10X_hapcompass_q5.txt
NA12877_25X_hapcompass_q3.txt

WhatsHap outputs:
NA12877_10X_whatshap_phased_q5.vcf
NA12877_25X_whatshap_phased.vcf
NA12878_hifi_whatshap.vcf
NA12878_whatshap_pacbio.vcf

Hapcut2 outputs:
NA12877_10X_hapcut2_q5.hap
NA12877_25X_hapcut2.hap
NA12878_hifi_hapcut2_pruned.hap
NA12878_hapcut2_pruned_pacbio.hap





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Subjects
Bioinformatics | Bioinformatics and computational biology not elsewhere classified | haplotype blocks |

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Identifiers
ACN 633 798 857