Data

Genomic and occurrence datasets for comparative phylogeography of pygmy perches

Flinders University
Buckley, Sean ; Brauer, Chris ; Hammer, Michael ; Unmack, Peter ; Beheregaray, Luciano B.
Viewed: [[ro.stat.viewed]] Cited: [[ro.stat.cited]] Accessed: [[ro.stat.accessed]]
ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.25451/flinders.18318602.v1&rft.title=Genomic and occurrence datasets for comparative phylogeography of pygmy perches&rft.identifier=10.25451/flinders.18318602.v1&rft.publisher=Flinders University&rft.description=Datasets associated with Buckley et al. 2022 Variation in intraspecific demography drives localised concordance but species-wide discordance in responses to Plio-Pleistocene climatic change. BMC Ecology and Evolution.Both_species_SDM_occurrences.csv = occurrence data used for ensemble species distribution models for Nannoperca australis and Nannoperca obscura.SPP_species_concatenated.phy = concatenated alignment for 44 Nannoperca australis and Nannoperca vittata (phylogenetic outgroup) of 19,428 species-wide ddRAD loci.SPP_species_SNPs.str = genotypes for 44 Nannoperca australis and Nannoperca vittata (phylogenetic outgroup) at 17,389 'unlinked' (one per RAD locus) SNPs.SPP_pop_SNPs.zip = compressed folder of genotypes for 'unlinked' (one per RAD locus) individual population SNPs for 9 populations of Nannoperca australis.YPP_species_concatenated.phy = concatenated alignment for 33 Nannoperca obscura and Nannoperca vittata (phylogenetic outgroup) of 21,051 species-wide ddRAD loci.YPP_species_SNPs.str = genotypes for 33 Nannoperca obscura and Nannoperca vittata (phylogenetic outgroup) at 15,715 'unlinked' (one per RAD locus) SNPs.YPP_pop_SNPs.zip = compressed folder of genotypes for 'unlinked' (one per RAD locus) individual population SNPs for 5 populations of Nannoperca obscura.&rft.creator=Buckley, Sean &rft.creator=Brauer, Chris &rft.creator=Hammer, Michael &rft.creator=Unmack, Peter &rft.creator=Beheregaray, Luciano B. &rft.date=2022&rft.edition=1&rft_rights= https://creativecommons.org/licenses/by/4.0/&rft_subject=Biogeography and phylogeography&rft_subject=Genomics&rft_subject=Freshwater ecology&rft_subject=Phylogeny and comparative analysis&rft_subject=genomics&rft_subject=phylogeography&rft_subject=freshwater&rft_subject=fish&rft_subject=ddRADseq&rft_subject=population genomics&rft_subject=Biogeography and Phylogeography&rft_subject=Freshwater Ecology&rft_subject=Phylogeny and Comparative Analysis&rft.type=dataset&rft.language=English Access the data
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Datasets associated with Buckley et al. 2022 "Variation in intraspecific demography drives localised concordance but species-wide discordance in responses to Plio-Pleistocene climatic change." BMC Ecology and Evolution.

Both_species_SDM_occurrences.csv = occurrence data used for ensemble species distribution models for Nannoperca australis and Nannoperca obscura.

SPP_species_concatenated.phy = concatenated alignment for 44 Nannoperca australis and Nannoperca vittata (phylogenetic outgroup) of 19,428 species-wide ddRAD loci.

SPP_species_SNPs.str = genotypes for 44 Nannoperca australis and Nannoperca vittata (phylogenetic outgroup) at 17,389 'unlinked' (one per RAD locus) SNPs.

SPP_pop_SNPs.zip = compressed folder of genotypes for 'unlinked' (one per RAD locus) individual population SNPs for 9 populations of Nannoperca australis.

YPP_species_concatenated.phy = concatenated alignment for 33 Nannoperca obscura and Nannoperca vittata (phylogenetic outgroup) of 21,051 species-wide ddRAD loci.

YPP_species_SNPs.str = genotypes for 33 Nannoperca obscura and Nannoperca vittata (phylogenetic outgroup) at 15,715 'unlinked' (one per RAD locus) SNPs.

YPP_pop_SNPs.zip = compressed folder of genotypes for 'unlinked' (one per RAD locus) individual population SNPs for 5 populations of Nannoperca obscura.

Issued: 13 01 2022

Created: 13 01 2022

Modified: 13 01 2022

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Biogeography and Phylogeography | Biogeography and phylogeography | Freshwater Ecology | Freshwater ecology | Genomics | Phylogeny and Comparative Analysis | Phylogeny and comparative analysis | ddRADseq | fish | freshwater | genomics | phylogeography | population genomics |

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