Data

Genetic data for wheat biparental mapping populations

Commonwealth Scientific and Industrial Research Organisation
Fradgley, Nick
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.25919/n146-7v55&rft.title=Genetic data for wheat biparental mapping populations&rft.identifier=https://doi.org/10.25919/n146-7v55&rft.publisher=Commonwealth Scientific and Industrial Research Organisation&rft.description=Whole genome sequencing data for the four parents of two biparental mapping populations as well as wheat DArTseq (1.0) low coverage marker data for recombinant inbred lines and parents.Parents for cross C3:Maternal line: 263:ZWB18\t(FRET2*2/BRAMBLING//MESIA/3/BECARD/4/HUIRIVIS #1*2/MURGA/5/BECARD/FRNCLN)Paternal line: VIXEN (MACE/IGW3119)Parents for cross C4:Maternal line: 4:ZIG18 (KACHU/BECARD//WBLL1*2/BRAMBLING)Paternal line: 70:ZIF14 (KARAWAN-1//BOW #1/FENGKANG 15/3/MOUKA-4)Lineage: Whole genome sequencing data were generated using Illumina sequencing 150bp Paired End reads. Image analysis was performed in real time by the NovaSeq Control Software (NCS) v1.3.1.59007 and Real Time Analysis (RTA) v4.29.3, running on the instrument computer. RTA performs real-time base calling on the NovaSeq instrument computer. Then the Illumina DRAGEN BCL Convert 07.031.732.4.3.6 pipeline was used to generate the sequence data.DArTseq (1.0) data provides markers in SilicoDArT Format: SilicoDArTs are scored in a binary fashion, representing genetically dominant markers, with 1=Presence and 0=Absence of a restriction fragment with the marker sequence in genomic representation of the sample. Single nucleotide polymorphism (SNP) data are also scored in 1 and 2-row formats.Marker positions are aligned against the RefSeq v2.1 Chinese Spring reference genome.&rft.creator=Fradgley, Nick &rft.date=2025&rft.edition=v1&rft_rights=Creative Commons Attribution 4.0 International Licence https://creativecommons.org/licenses/by/4.0/&rft_rights=Data is accessible online and may be reused in accordance with licence conditions&rft_rights=All Rights (including copyright) CSIRO 2025.&rft_subject=Whole genome sequencing&rft_subject=Wheat&rft_subject=Biparental mapping population&rft_subject=DArTseq&rft_subject=SNP&rft_subject=Genotype&rft_subject=Agricultural biotechnology diagnostics (incl. biosensors)&rft_subject=Agricultural biotechnology&rft_subject=AGRICULTURAL, VETERINARY AND FOOD SCIENCES&rft_subject=Crop and pasture improvement (incl. selection and breeding)&rft_subject=Crop and pasture production&rft.type=dataset&rft.language=English Access the data
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Data is accessible online and may be reused in accordance with licence conditions

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Whole genome sequencing data for the four parents of two biparental mapping populations as well as wheat DArTseq (1.0) low coverage marker data for recombinant inbred lines and parents.

Parents for cross C3:
Maternal line: 263:ZWB18\t(FRET2*2/BRAMBLING//MESIA/3/BECARD/4/HUIRIVIS #1*2/MURGA/5/BECARD/FRNCLN)
Paternal line: VIXEN (MACE/IGW3119)

Parents for cross C4:
Maternal line: 4:ZIG18 (KACHU/BECARD//WBLL1*2/BRAMBLING)
Paternal line: 70:ZIF14 (KARAWAN-1//BOW #1/FENGKANG 15/3/MOUKA-4)


Lineage: Whole genome sequencing data were generated using Illumina sequencing 150bp Paired End reads. Image analysis was performed in real time by the NovaSeq Control Software (NCS) v1.3.1.59007 and Real Time Analysis (RTA) v4.29.3, running on the instrument computer. RTA performs real-time base calling on the NovaSeq instrument computer. Then the Illumina DRAGEN BCL Convert 07.031.732.4.3.6 pipeline was used to generate the sequence data.


DArTseq (1.0) data provides markers in SilicoDArT Format: SilicoDArTs are scored in a binary fashion, representing genetically "dominant" markers, with "1"=Presence and "0"=Absence of a restriction fragment with the marker sequence in genomic representation of the sample.

Single nucleotide polymorphism (SNP) data are also scored in 1 and 2-row formats.

Marker positions are aligned against the RefSeq v2.1 Chinese Spring reference genome.

Available: 2025-08-25

This dataset is part of a larger collection

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Subjects
Agricultural, Veterinary and Food Sciences | Agricultural Biotechnology | Agricultural Biotechnology Diagnostics (Incl. Biosensors) | Biparental mapping population | Crop and Pasture Improvement (Incl. Selection and Breeding) | Crop and Pasture Production | DArTseq | Genotype | SNP | Wheat | Whole genome sequencing |

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Identifiers
ACN 633 798 857