Data

Genetic sequences of euryhaline Elasmobranchs (NESP MB A1)

University of Tasmania, Australia

Feutry, Pierre ; Kyne, Peter

Viewed: [[ro.stat.viewed]] Cited: [[ro.stat.cited]] Accessed: [[ro.stat.accessed]]

ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.25959/HVY5-F927&rft.title=Genetic sequences of euryhaline Elasmobranchs (NESP MB A1)&rft.identifier=10.25959/HVY5-F927&rft.description=This database contains molecular data of elasmobranchs in northern Australian rivers, estuaries and coasts undertaken under the National Environmental Research Program (NERP) Marine Biodiversity Hub Project 2.4 'Supporting Management of Listed and Rare Species'. and the National Environmental Science Program (NESP) Marine Biodiversity Hub Project A1 'Northern Australian Hotspots for the Recovery of Threatened Euryhaline Elasmobranchs'. Surveys using gillnets and rod-and-line were undertaken in the Top End region of the Northern Territory and the Kimberley region of Western Australia. Tissue samples were collected from all elasmobranchs for molecular analyses (population genetics and close-kin mark-recapture).Maintenance and Update Frequency: irregularStatement: Genomic DNA was extracted from fin clips prior to sequencing. Reference mitogenomes were sequenced using Sanger sequencing whereas mitogenomes resequencing for population analyses were carried out with an Illumina Miseq sequencer. SNP genotyping was done using the DArTseq proprietary method.&rft.creator=Feutry, Pierre &rft.creator=Kyne, Peter &rft.date=2018&rft.coverage=westlimit=121.775390625; southlimit=-18.1871908799; eastlimit=138.123046875; northlimit=-10.6169880271&rft.coverage=westlimit=121.775390625; southlimit=-18.1871908799; eastlimit=138.123046875; northlimit=-10.6169880271&rft.coverage=uplimit=25; downlimit=0&rft.coverage=uplimit=25; downlimit=0&rft_rights=This dataset is hosted by the Institute for Marine and Antarctic Studies (IMAS), University of Tasmania, on behalf of CSIRO, Charles Darwin University, and Marine Biodiversity Hub Project A1.&rft_rights=Creative Commons Attribution 4.0 International License http://creativecommons.org/licenses/by/4.0/&rft_rights=Cite data as: Feutry, P., & Kyne, P. (2017). Genetic sequences of euryhaline Elasmobranchs [Data set]. Institute for Marine and Antarctic Studies. https://doi.org/10.25959/HVY5-F927&rft_subject=biota&rft_subject=Close-kin mark-recapture&rft_subject=Population genetics&rft_subject=Euryhaline elasmobranchs&rft_subject=FISH&rft_subject=EARTH SCIENCE&rft_subject=BIOLOGICAL CLASSIFICATION&rft_subject=ANIMALS/VERTEBRATES&rft_subject=SHARKS/RAYS/CHIMAERAS&rft_subject=ENDANGERED SPECIES&rft_subject=BIOSPHERE&rft_subject=ECOLOGICAL DYNAMICS&rft_subject=SPECIES/POPULATION INTERACTIONS&rft_subject=ANIMAL BREEDING AND GENETICS&rft_subject=AGRICULTURE&rft_subject=ANIMAL SCIENCE&rft_subject=SURVIVAL RATES&rft_subject=MIGRATORY RATES/ROUTES&rft_subject=Anoxypristis cuspidata&rft_subject=Carcharhinus leucas&rft_subject=Eusphyra blochii&rft_subject=Glyphis garricki&rft_subject=Glyphis glyphis&rft_subject=Himantura uarnak&rft_subject=Negaprion acutidens&rft_subject=Pateobatis hortlei&rft_subject=Pristis clavata&rft_subject=Pristis pristis&rft_subject=Rhizoprionodon taylori&rft_subject=Urogymnus acanthobothrium&rft_subject=Urogymnus dalyensis&rft_subject=Glaucostegus typus&rft.type=dataset&rft.language=English Access the data

Access data via landing page
https://metadata.imas....

Cite Saved to MyRDA Save to MyRDA

Licence & Rights:

Open Licence view details

Creative Commons Attribution 4.0 International License
http://creativecommons.org/licenses/by/4.0/

This dataset is hosted by the Institute for Marine and Antarctic Studies (IMAS), University of Tasmania, on behalf of CSIRO, Charles Darwin University, and Marine Biodiversity Hub Project A1.

Cite data as: Feutry, P., & Kyne, P. (2017). Genetic sequences of euryhaline Elasmobranchs [Data set]. Institute for Marine and Antarctic Studies. https://doi.org/10.25959/HVY5-F927

Access:

Open

Full description

This database contains molecular data of elasmobranchs in northern Australian rivers, estuaries and coasts undertaken under the National Environmental Research Program (NERP) Marine Biodiversity Hub Project 2.4 'Supporting Management of Listed and Rare Species'. and the National Environmental Science Program (NESP) Marine Biodiversity Hub Project A1 'Northern Australian Hotspots for the Recovery of Threatened Euryhaline Elasmobranchs'. Surveys using gillnets and rod-and-line were undertaken in the Top End region of the Northern Territory and the Kimberley region of Western Australia. Tissue samples were collected from all elasmobranchs for molecular analyses (population genetics and close-kin mark-recapture).

Lineage

Maintenance and Update Frequency: irregular

Statement: Genomic DNA was extracted from fin clips prior to sequencing. Reference mitogenomes were sequenced using Sanger sequencing whereas mitogenomes resequencing for population analyses were carried out with an Illumina Miseq sequencer. SNP genotyping was done using the DArTseq proprietary method.

Notes

Credit
The data collections described in this record are funded by the Australian Government Department of Agriculture, Water and the Environment (DAWE) through the NESP Marine Biodiversity Hub. In addition to NESP (DAWE) funding, this project is matched by an equivalent amount of in-kind support and co-investment from project partners and collaborators.

Data time period: 2010-10-01 to 2015-12-01

This dataset is part of a larger collection

Click to explore relationships graph

text: westlimit=121.775390625; southlimit=-18.1871908799; eastlimit=138.123046875; northlimit=-10.6169880271

text: uplimit=25; downlimit=0

Subjects

User Contributed Tags

Other Information

(DATA ACCESS - Euryhaline elasmobranch genetics sequence index accession/run numbers (for search in Genbank, Sequence Read Archive))

url : https://data.imas.utas.edu.au/attachments/f7d3a11e-bd2b-4d8d-af3d-d2fc3a058339/Euryhaline_elasmo_genetics_sequence_index.csv External Link

(Sequence Access - KM100613 to KM100704 (Genbank))

(Sequence Access - KY039188 to KY039268 (Genbank))

(Sequence Access - SNP Geontypes (Appendix S4 from /10.1111/mec.13929))

doi : https://onlinelibrary.wiley.com/action/downloadSupplement?doi=10.1111%2Fmec.13929&file=mec13929-sup-0003-AppendixS4.xlsx DOI Link

(Sequence Access - SRR1732112 to SRR1732203 (Sequence Read Archive))

global : e42486aa-40d8-4fb0-96fd-f3c0cc246fd9

local : 026nh4520

local : 0000-0001-8492-5382

local : 048zcaj52

local : 0000-0003-4494-2625

local : 026nh4520

local : 0000-0001-8492-5382

NESP MB Project A1 - Northern Australian hotspots for the recovery of threatened euryhaline species, 2015-2017 (CDU)

doi : 10.71676/0714b927 DOI Link

Identifiers

global : f7d3a11e-bd2b-4d8d-af3d-d2fc3a058339
DOI : 10.25959/HVY5-F927

Genetic sequences of euryhaline Elasmobranchs (NESP MB A1)

Licence & Rights:

Access:

Full description

Lineage

Notes

This dataset is part of a larger collection

Related Program

Related Grants and Projects

User Contributed Tags

(DATA ACCESS - Euryhaline elasmobranch genetics sequence index accession/run numbers (for search in Genbank, Sequence Read Archive))

(Browse Associated Publications)

(Sequence Access - KP233202 (Genbank))

(Sequence Access - KP400584 (Genbank))

(Sequence Access - KF006312 (Genbank))

(Sequence Access - KF381507 (Genbank))

(Sequence Access - KF956523 (Genbank))

(Sequence Access - KF646786 (Genbank))

(Sequence Access - KM244769 (Genbank))

(Sequence Access - KM921745 (Genbank))

(Sequence Access - KU892590 (Genbank))

(Sequence Access - KM100613 to KM100704 (Genbank))

(Sequence Access - KY039188 to KY039268 (Genbank))

(Sequence Access - SNP Geontypes (Appendix S4 from /10.1111/mec.13929))

(Sequence Access - SRR1732112 to SRR1732203 (Sequence Read Archive))

NESP MB Project A1 - Northern Australian hotspots for the recovery of threatened euryhaline species, 2015-2017 (CDU)