Data

Fungal communities collected from the three distinct chambers of Myrmecodia beccarii from five locations in northern Queensland

James Cook University
Greenfield, Melinda
Viewed: [[ro.stat.viewed]] Cited: [[ro.stat.cited]] Accessed: [[ro.stat.accessed]]
ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.25903/5f713cd732757&rft.title=Fungal communities collected from the three distinct chambers of Myrmecodia beccarii from five locations in northern Queensland&rft.identifier=10.25903/5f713cd732757&rft.publisher=James Cook University&rft.description=Dataset containing:1) 374 fungal operational taxonomic units (OTUs) with OTUID, representative sequence, taxonomy, Accession number (closest match of representative sequence to sequence in GenBank), UNITE species hypothesis number, score, e-value, sequence information (e.g. length, percentage similarity to closest match, percentage coverage to closest match), total sequence abundance, and sample abundances for the 135 samples. 2) sample data for 135 samples collected from five locations including: sampleCode (label given to the sample), location (where the sample was collected from: Annan River National Park, Cardwell, Cowley Beach, Kutini-Payamu National Park, Port Douglas), site (some locations had more than one site and this is indicated), sampleType (three chamber types: waste, nursery and ventilation chambers).Data was collected to establish if fungal communities differ in the three different chambers of Myrmecodia beccarii and if they do, whether there is consistency in fungal communities across the five locations sampled. Methodology: whole M. beccarii ant-plants were collected between March 2016 and March 2017 - Cowley Beach (March 2016), Cardwell (August 2016), Kutini-Payamu National Park (September 2016), Annan River National Park (October 2016), Port Douglas (March 2017). The three chamber types were collected from dissected M. beccarii ant-plants and fungal DNA was extracted from these samples (at James Cook University).  Multiplexing PCR was conducted and PacBio sequencing was used to sequence whole fungal communities in the different chambers.Dataset containing 374 fungal OTUs with taxonomy and sample abundances.&rft.creator=Greenfield, Melinda &rft.date=2021&rft.relation=http://doi.org/10.1007/s11557-021-01690-z&rft.coverage=146.01769882107,-18.246161186 146.00693404884,-18.249432975019 145.99776071669,-18.255703670962 145.99107677429,-18.264359172344 145.98753649248,-18.274551934484 145.98748641872,-18.285284041484 145.99093145458,-18.295504956997 145.99753437593,-18.304214359298 146.00664884285,-18.310559993863 146.01738266779,-18.313920990047 146.02868514919,-18.313968527522 146.03944992142,-18.310697955632 146.04862325356,-18.304429247618 146.05530719597,-18.295775745645 146.05884747777,-18.285584230688 146.05889755153,-18.274852142262 146.05545251568,-18.264630009622 146.04884959432,-18.255918619391 146.03973512741,-18.249570985417 146.02900130247,-18.24620874205 146.01769882107,-18.246161186&rft.coverage=146.10616853542,-17.685716323353 146.10246682694,-17.687000199637 146.09936271524,-17.68931103893 146.09716005241,-17.692422606063 146.09607445042,-17.69603028656 146.09621217556,-17.699780916874 146.09755974633,-17.703307361622 146.09998525313,-17.706264450427 146.10325127044,-17.708362756968 146.10703809773,-17.709396917004 146.11097505397,-17.709265718389 146.11467676245,-17.707982001298 146.11778087415,-17.705671402282 146.11998353699,-17.70256006473 146.12106913898,-17.698952515428 146.12093141384,-17.69520186781 146.11958384306,-17.691675263869 146.11715833626,-17.688717934788 146.11389231895,-17.686619398665 146.11010549166,-17.685585107434 146.10616853542,-17.685716323353&rft.coverage=145.46101869412,-16.461541052054 145.45006942084,-16.453191551432 145.43696568369,-16.448495438332 145.42299016775,-16.447912673843 145.40951089391,-16.451500339113 145.3978473074,-16.458907034093 145.38914112133,-16.469407356713 145.38424455786,-16.481973056384 145.38363692673,-16.495373841234 145.38737770712,-16.508297912299 145.39510072537,-16.519480385854 145.40604999865,-16.527827027337 145.4191537358,-16.532521215979 145.43312925174,-16.533103725768 145.44660852558,-16.529517572842 145.45827211209,-16.522113579586 145.46697829816,-16.511616116104 145.47187486163,-16.499052340893 145.47248249275,-16.485651810743 145.46874171237,-16.472726227334 145.46101869412,-16.461541052054&rft.coverage=143.28297914333,-12.490652657418 143.22794543656,-12.500012102297 143.17856766703,-12.52551527442 143.13967927487,-12.564661468481 143.11508692685,-12.613613588828 143.10719789333,-12.667575722312 143.1167844079,-12.721264180253 143.14290807569,-12.769425292265 143.18301173011,-12.807349027473 143.23316974604,-12.831328399243 143.2884723074,-12.839020310734 143.34350601417,-12.82967330213 143.3928837837,-12.804200536549 143.43177217586,-12.765091105095 143.45636452388,-12.716168061347 143.4642535574,-12.662216212118 143.45466704284,-12.608515317818 143.42854337504,-12.560323799139 143.38843972062,-12.522363301333 143.33828170469,-12.498354853093 143.28297914333,-12.490652657418&rft.coverage=145.20558656521,-15.509698958798 145.18655711707,-15.51302232233 145.16952483118,-15.521849011913 145.15615694638,-15.535314379871 145.14776200435,-15.552099587184 145.14516176052,-15.570560988544 145.14861074487,-15.588891250197 145.15777134678,-15.605296342628 145.17174686272,-15.618171052367 145.1891692718,-15.626255870408 145.20833314723,-15.628759991924 145.22736259538,-15.625438498357 145.24439488126,-15.616616254195 145.25776276607,-15.603156209117 145.2661577081,-15.586375168983 145.26875795193,-15.567915187379 145.26530896758,-15.54958305576 145.25614836566,-15.533173517905 145.24217284973,-15.520293485287 145.22475044065,-15.512204500069 145.20558656521,-15.509698958798&rft.coverage=Northern Queensland&rft.coverage=Iron Range National Park, Queensland, Australia&rft.coverage=Annan River (Yuku Baja-Mulika) National Park, Queensland, Australia&rft.coverage=Port Douglas, Queensland, Australia&rft.coverage=Cowley Beach, Queensland, Australia&rft.coverage=Cardwell, Queensland, Australia&rft_rights=&rft_rights=CC BY 4.0: Attribution 4.0 International http://creativecommons.org/licenses/by/4.0&rft_subject=Ant-plant&rft_subject=myrmecophyte&rft_subject=mutualism&rft_subject=symbiosis&rft_subject=fungi&rft_subject=Myrmecodia beccarii&rft_subject=Philidris cordata&rft_subject=metabarcoding&rft_subject=PacBIo sequencing&rft.type=dataset&rft.language=English Access the data
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Brief description

Dataset containing 374 fungal OTUs with taxonomy and sample abundances.

Full description

Dataset containing:

1) 374 fungal operational taxonomic units (OTUs) with OTUID, representative sequence, taxonomy, Accession number (closest match of representative sequence to sequence in GenBank), UNITE species hypothesis number, score, e-value, sequence information (e.g. length, percentage similarity to closest match, percentage coverage to closest match), total sequence abundance, and sample abundances for the 135 samples.

2) sample data for 135 samples collected from five locations including: sampleCode (label given to the sample), location (where the sample was collected from: Annan River National Park, Cardwell, Cowley Beach, Kutini-Payamu National Park, Port Douglas), site (some locations had more than one site and this is indicated), sampleType (three chamber types: waste, nursery and ventilation chambers).

Data was collected to establish if fungal communities differ in the three different chambers of Myrmecodia beccarii and if they do, whether there is consistency in fungal communities across the five locations sampled. 

Methodology: whole M. beccarii ant-plants were collected between March 2016 and March 2017 - Cowley Beach (March 2016), Cardwell (August 2016), Kutini-Payamu National Park (September 2016), Annan River National Park (October 2016), Port Douglas (March 2017). The three chamber types were collected from dissected M. beccarii ant-plants and fungal DNA was extracted from these samples (at James Cook University).  Multiplexing PCR was conducted and PacBio sequencing was used to sequence whole fungal communities in the different chambers.

Notes

Data table for 374 fungal OTUs including taxonomic information, BLASTn search results, and sequence abundance data for each OTU across samples collected from five locations (in MS Excel spreadsheet format). Sample data also provided in second worksheet including sample code, location, chamber type and date of collection. A third worksheet contains notes that explain column headings and abbreviations. Also saved in Open Document (.ods) format.

Created: 2021-11-15

This dataset is part of a larger collection

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text: Northern Queensland

text: Iron Range National Park, Queensland, Australia

text: Annan River (Yuku Baja-Mulika) National Park, Queensland, Australia

text: Port Douglas, Queensland, Australia

text: Cowley Beach, Queensland, Australia

text: Cardwell, Queensland, Australia

Subjects
Ant-plant | Myrmecodia beccarii | PacBIo sequencing | Philidris cordata | fungi | metabarcoding | mutualism | myrmecophyte | symbiosis |

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Identifiers
  • Local : https://research.jcu.edu.au/data/published/00620c844bdf871c687a35437f99627c
  • DOI : 10.25903/5f713cd732757
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