Data

Franklin Voyage FR 01/2000 HPLC Pigment and Ocean Colour Data

Integrated Marine Observing System
CSIRO O&A, Information & Data Centre (Point of contact) CSIRO Oceans & Atmosphere - Hobart (Associated with) Clementson, Lesley (Point of contact)
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=https://marlin.csiro.au/geonetwork/srv/eng/catalog.search#/metadata/60c5394e-f5f6-4653-a096-e27a80eaff17&rft.title=Franklin Voyage FR 01/2000 HPLC Pigment and Ocean Colour Data&rft.identifier=Anzlic Identifier: ANZCW0306006374&rft.publisher=Integrated Marine Observing System&rft.description=This record contains data collected at 17 stations on the Franklin cruise FR01/2000 in an area between the mouth of the Sepik River, Papua New Guinea and the equator, plus an additional 4 stations sampled within the Sepik River. The data were collected to determine the bio-optical characteristics of this region and the effect of the Sepik River outflow on such data. The data can be used for Ocean Colour sensor validation. Parameters measured are the concentration of chlorophyll and carotenoid pigments in the water column. The six channel radiometer was also deployed during this voyage.Progress Code: completedMaintenance and Update Frequency: notPlannedStatement: Water samples were taken on-board the RV Franklin. Samples were filtered onboard. Samples were analysed and QC procedures were carried out in the Ocean Colour Laboratory. Pigment analysis 6 litres of sample water was filtered through a 47 mm glass fibre filter (Whatman GF/F) and then stored in liquid nitrogen until analysis. To extract the pigments, the filters were cut into small pieces and covered with 100% acetone (3 mls) in a 10 ml centrifuge tube. The samples were vortexed for about 30 seconds and then sonicated for 15 minutes in the dark. The samples were then kept in the dark at 4 °C for approximately 15 hours. After this time 200 µL water was added to the acetone such that the extract mixture was 90:10 acetone:water (vol:vol) and sonicated once more for 15 minutes. The extracts were centrifuged to remove the filter paper and then filtered through a 0.2 µm membrane filter (Whatman, anatope) prior to analysis by HPLC using a Waters high performance liquid chromatograph, comprising a 600 controller, 717 plus refrigerated autosampler and a 996 photo-diode array detector. Pigments were separated using a stainless steel 25 cm x 4.6 mm I.D. column packed with ODS2 of 5 µm particle size (SGE) with gradient elution as described in Wright et al., [1991]. The separated pigments were detected at 436 nm and identified against standard spectra using Waters Millenium software. Concentrations of chlorophyll a, chlorophyll b, b,b-carotene and b,e-carotene in sample chromatograms were determined from standards (Sigma) and all other pigment concentrations were determined from standards of purified pigments isolated from algal cultures. Spectral absorption 4 litres of sample water was filtered through a 25 mm glass fibre filter (Whatman GF/F) and the filter then stored flat in liquid nitrogen until analysis. Optical density spectra for total particulate matter were obtained using a GBC 916 UV/VIS dual beam spectrophotometer equipped&rft.creator=Anonymous&rft.date=2004&rft.coverage=westlimit=142; southlimit=-11; eastlimit=153; northlimit=3&rft.coverage=westlimit=142; southlimit=-11; eastlimit=153; northlimit=3&rft_rights=&rft_rights=Data is made available under a Creative Commons Attribution 4.0 International Licence, please see link. Data is supplied 'as is' without any warranty or guarantee except as required by law to be given to you. The data may not be free of error, comprehensive, current or appropriate for your particular purpose. You accept all risk and responsibility for its use. ATTRIBUTION STATEMENT: The dataset [Insert-dataset-name-here] downloaded on [Insert-DD-Mmm-YYYY-here] was collected on voyage [Insert-voyage-name-here] by the Marine National Facility.&rft_subject=oceans&rft_subject=Earth Science | Oceans | Ocean Chemistry | Chlorophyll&rft_subject=Earth Science | Oceans | Ocean Chemistry | Pigments&rft_subject=Earth Science | Oceans | Ocean Chemistry | Suspended Solids&rft_subject=Earth Science | Oceans | Ocean Optics | Absorption&rft_subject=Earth Science | Oceans | Ocean Optics | Fluorescence&rft_subject=Earth Science | Oceans | Ocean Optics | Gelbstoff&rft_subject=Earth Science | Oceans | Ocean Optics | Ocean Color&rft_subject=Earth Science | Terrestrial Hydrosphere | Water Quality/Water Chemistry | Chlorophyll&rft_subject=CTDs (Conductivity-Temperature-Depth Profilers)&rft_subject=Fluorometers&rft_subject=HPLC (High Performance Liquid Chromatography)&rft_subject=Niskin Bottles&rft_subject=Spectrophotometers&rft_subject=Global / Oceans | Pacific Ocean&rft_subject=Regional Seas | Bismarck Sea&rft_subject=Regional Seas | Coral Sea&rft_subject=Regional Seas | Solomon Sea&rft_subject=WfO Biogeochemistry&rft_subject=Research Voyage: FR 01/2000&rft_subject=Ocean Colour 2000-2003&rft_subject=Ship: Franklin&rft_subject=Practical salinity of the water body&rft_subject=Temperature of the water body&rft_subject=Pressure (measured variable) in the water body exerted by overlying sea water and any medium above it&rft_subject=Pressure (measured variable) in the water body exerted by overlying sea water only&rft_subject=CTD&rft_subject=research vessel&rft.type=dataset&rft.language=English Access the data
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Data is made available under a Creative Commons Attribution 4.0 International Licence, please see link. Data is supplied 'as is' without any warranty or guarantee except as required by law to be given to you. The data may not be free of error, comprehensive, current or appropriate for your particular purpose. You accept all risk and responsibility for its use. ATTRIBUTION STATEMENT: The dataset [Insert-dataset-name-here] downloaded on [Insert-DD-Mmm-YYYY-here] was collected on voyage [Insert-voyage-name-here] by the Marine National Facility.

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This record contains data collected at 17 stations on the Franklin cruise FR01/2000 in an area between the mouth of the Sepik River, Papua New Guinea and the equator, plus an additional 4 stations sampled within the Sepik River. The data were collected to determine the bio-optical characteristics of this region and the effect of the Sepik River outflow on such data. The data can be used for Ocean Colour sensor validation. Parameters measured are the concentration of chlorophyll and carotenoid pigments in the water column. The six channel radiometer was also deployed during this voyage.

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Progress Code: completed
Maintenance and Update Frequency: notPlanned
Statement: Water samples were taken on-board the RV Franklin. Samples were filtered onboard. Samples were analysed and QC procedures were carried out in the Ocean Colour Laboratory. Pigment analysis 6 litres of sample water was filtered through a 47 mm glass fibre filter (Whatman GF/F) and then stored in liquid nitrogen until analysis. To extract the pigments, the filters were cut into small pieces and covered with 100% acetone (3 mls) in a 10 ml centrifuge tube. The samples were vortexed for about 30 seconds and then sonicated for 15 minutes in the dark. The samples were then kept in the dark at 4 °C for approximately 15 hours. After this time 200 µL water was added to the acetone such that the extract mixture was 90:10 acetone:water (vol:vol) and sonicated once more for 15 minutes. The extracts were centrifuged to remove the filter paper and then filtered through a 0.2 µm membrane filter (Whatman, anatope) prior to analysis by HPLC using a Waters high performance liquid chromatograph, comprising a 600 controller, 717 plus refrigerated autosampler and a 996 photo-diode array detector. Pigments were separated using a stainless steel 25 cm x 4.6 mm I.D. column packed with ODS2 of 5 µm particle size (SGE) with gradient elution as described in Wright et al., [1991]. The separated pigments were detected at 436 nm and identified against standard spectra using Waters Millenium software. Concentrations of chlorophyll a, chlorophyll b, b,b-carotene and b,e-carotene in sample chromatograms were determined from standards (Sigma) and all other pigment concentrations were determined from standards of purified pigments isolated from algal cultures. Spectral absorption 4 litres of sample water was filtered through a 25 mm glass fibre filter (Whatman GF/F) and the filter then stored flat in liquid nitrogen until analysis. Optical density spectra for total particulate matter were obtained using a GBC 916 UV/VIS dual beam spectrophotometer equipped

Notes

Credit
TROPICS project (Tropical River-Ocean Processes in Coastal Settings
Credit
Lesley Clementson
Credit
Don McKenzie
Credit
Allison Turnbull

Data time period: 2000-01-18 to 2000-02-02

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153,3 153,-11 142,-11 142,3 153,3

147.5,-4

text: westlimit=142; southlimit=-11; eastlimit=153; northlimit=3

Subjects
CTD | CTDs (Conductivity-Temperature-Depth Profilers) | Earth Science | Oceans | Ocean Chemistry | Chlorophyll | Earth Science | Oceans | Ocean Chemistry | Pigments | Earth Science | Oceans | Ocean Chemistry | Suspended Solids | Earth Science | Oceans | Ocean Optics | Absorption | Earth Science | Oceans | Ocean Optics | Fluorescence | Earth Science | Oceans | Ocean Optics | Gelbstoff | Earth Science | Oceans | Ocean Optics | Ocean Color | Earth Science | Terrestrial Hydrosphere | Water Quality/Water Chemistry | Chlorophyll | Fluorometers | Global / Oceans | Pacific Ocean | HPLC (High Performance Liquid Chromatography) | Niskin Bottles | Ocean Colour 2000-2003 | Practical salinity of the water body | Pressure (measured variable) in the water body exerted by overlying sea water and any medium above it | Pressure (measured variable) in the water body exerted by overlying sea water only | Regional Seas | Bismarck Sea | Regional Seas | Coral Sea | Regional Seas | Solomon Sea | Research Voyage: FR 01/2000 | Ship: Franklin | Spectrophotometers | Temperature of the water body | WfO Biogeochemistry | oceans | research vessel |

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url : https://www.marine.csiro.au/data/trawler/download.cfm?file_id=1199

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Identifiers
  • Local : Anzlic Identifier: ANZCW0306006374
  • Local : Marlin Record Number: 6374
  • global : 60c5394e-f5f6-4653-a096-e27a80eaff17