Data

Euryhaline Elasmobranchs genetics outputs (NESP MBH A1)

Australian Ocean Data Network
Dr Pierre Feutry ; Dr Peter Kyne
Viewed: [[ro.stat.viewed]] Cited: [[ro.stat.cited]] Accessed: [[ro.stat.accessed]]
ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=https://metadata.imas.utas.edu.au/geonetwork/srv/eng/catalog.search#/metadata/f7d3a11e-bd2b-4d8d-af3d-d2fc3a058339&rft.title=Euryhaline Elasmobranchs genetics outputs (NESP MBH A1)&rft.identifier=https://metadata.imas.utas.edu.au/geonetwork/srv/eng/catalog.search#/metadata/f7d3a11e-bd2b-4d8d-af3d-d2fc3a058339&rft.description=This database contains molecular data of elasmobranchs in northern Australian rivers, estuaries and coasts undertaken under the National Environmental Research Program (NERP) Marine Biodiversity Hub Project 2.4 'Supporting Management of Listed and Rare Species'. and the National Environmental Science Program (NESP) Marine Biodiversity Hub Project A1 'Northern Australian Hotspots for the Recovery of Threatened Euryhaline Elasmobranchs'. Surveys using gillnets and rod-and-line were undertaken in the Top End region of the Northern Territory and the Kimberley region of Western Australia. Tissue samples were collected from all elasmobranchs for molecular analyses (population genetics and close-kin mark-recapture).Maintenance and Update Frequency: irregularStatement: Genomic DNA was extracted from fin clips prior to sequencing. Reference mitogenomes were sequenced using Sanger sequencing whereas mitogenomes resequencing for population analyses were carried out with an Illumina Miseq sequencer. SNP genotyping was done using the DArTseq proprietary method.&rft.creator=Dr Pierre Feutry &rft.creator=Dr Peter Kyne &rft.date=2018&rft.coverage=westlimit=121.775390625; southlimit=-18.1871908799; eastlimit=138.123046875; northlimit=-10.6169880271&rft.coverage=westlimit=121.775390625; southlimit=-18.1871908799; eastlimit=138.123046875; northlimit=-10.6169880271&rft.coverage=uplimit=25; downlimit=0&rft.coverage=uplimit=25; downlimit=0&rft_rights=The data described in this record are the intellectual property of CSIRO through Oceans and Atmosphere, and Charles Darwin University through the Research Institute for the Environment and Livelihoods.&rft_rights= http://creativecommons.org/licenses/by/4.0/&rft_rights=http://i.creativecommons.org/l/by/4.0/88x31.png&rft_rights=WWW:LINK-1.0-http--related&rft_rights=License Graphic&rft_rights=Creative Commons Attribution 4.0 International License&rft_rights=http://creativecommons.org/international/&rft_rights=WWW:LINK-1.0-http--related&rft_rights=WWW:LINK-1.0-http--related&rft_rights=License Text&rft_rights=Data was sourced from the NESP Marine Biodiversity Hub - The Marine Biodiversity Hub is supported through funding from the Australian Government's National Environmental Science Program (NESP), administered by the Department of the Environment (DOE).&rft_rights=This data is hosted by the Institute for Marine and Antarctic Studies, University of Tasmania, on behalf of CSIRO Oceans and Atmosphere, and Charles Darwin University.&rft_rights=Creative Commons Attribution 4.0 International License http://creativecommons.org/licenses/by/4.0&rft_subject=biota&rft_subject=Close-kin mark-recapture&rft_subject=Population genetics&rft_subject=Euryhaline elasmobranchs&rft_subject=FISH&rft_subject=EARTH SCIENCE&rft_subject=BIOLOGICAL CLASSIFICATION&rft_subject=ANIMALS/VERTEBRATES&rft_subject=SHARKS/RAYS/CHIMAERAS&rft_subject=ENDANGERED SPECIES&rft_subject=BIOSPHERE&rft_subject=ECOLOGICAL DYNAMICS&rft_subject=SPECIES/POPULATION INTERACTIONS&rft_subject=ANIMAL BREEDING AND GENETICS&rft_subject=AGRICULTURE&rft_subject=ANIMAL SCIENCE&rft_subject=SURVIVAL RATES&rft_subject=MIGRATORY RATES/ROUTES&rft_subject=Anoxypristis cuspidata&rft_subject=Carcharhinus leucas&rft_subject=Eusphyra blochii&rft_subject=Glyphis garricki&rft_subject=Glyphis glyphis&rft_subject=Himantura uarnak&rft_subject=Negaprion acutidens&rft_subject=Pateobatis hortlei&rft_subject=Pristis clavata&rft_subject=Pristis pristis&rft_subject=Rhizoprionodon taylori&rft_subject=Urogymnus acanthobothrium&rft_subject=Urogymnus dalyensis&rft_subject=Glaucostegus typus&rft.type=dataset&rft.language=English Access the data
Cite Saved to MyRDA Save to MyRDA

Licence & Rights:

Open Licence view details
CC-BY

http://creativecommons.org/licenses/by/4.0/

Creative Commons Attribution 4.0 International License
http://creativecommons.org/licenses/by/4.0

The data described in this record are the intellectual property of CSIRO through Oceans and Atmosphere, and Charles Darwin University through the Research Institute for the Environment and Livelihoods.

http://i.creativecommons.org/l/by/4.0/88x31.png

WWW:LINK-1.0-http--related

License Graphic

Creative Commons Attribution 4.0 International License

http://creativecommons.org/international/

WWW:LINK-1.0-http--related

WWW:LINK-1.0-http--related

License Text

Data was sourced from the NESP Marine Biodiversity Hub - The Marine Biodiversity Hub is supported through funding from the Australian Government's National Environmental Science Program (NESP), administered by the Department of the Environment (DOE).

This data is hosted by the Institute for Marine and Antarctic Studies, University of Tasmania, on behalf of CSIRO Oceans and Atmosphere, and Charles Darwin University.

Access:

Open

Brief description

This database contains molecular data of elasmobranchs in northern Australian rivers, estuaries and coasts undertaken under the National Environmental Research Program (NERP) Marine Biodiversity Hub Project 2.4 'Supporting Management of Listed and Rare Species'. and the National Environmental Science Program (NESP) Marine Biodiversity Hub Project A1 'Northern Australian Hotspots for the Recovery of Threatened Euryhaline Elasmobranchs'. Surveys using gillnets and rod-and-line were undertaken in the Top End region of the Northern Territory and the Kimberley region of Western Australia. Tissue samples were collected from all elasmobranchs for molecular analyses (population genetics and close-kin mark-recapture).

Lineage

Maintenance and Update Frequency: irregular
Statement: Genomic DNA was extracted from fin clips prior to sequencing. Reference mitogenomes were sequenced using Sanger sequencing whereas mitogenomes resequencing for population analyses were carried out with an Illumina Miseq sequencer. SNP genotyping was done using the DArTseq proprietary method.

Notes

Credit
National Environmental Science Program (NESP) Marine Biodiversity Hub
Credit
Charles Darwin University
Credit
Commonwealth Scientific and Industrial Research Organisation (CSIRO)

Data time period: 2010-10-01 to 2015-12-01

This dataset is part of a larger collection

Click to explore relationships graph
Help

Related Organisations

Related People

Related Program

Related Grants and Projects

Related Services

138.12305,-10.61699 138.12305,-18.18719 121.77539,-18.18719 121.77539,-10.61699 138.12305,-10.61699

129.94921875,-14.4020894535

text: westlimit=121.775390625; southlimit=-18.1871908799; eastlimit=138.123046875; northlimit=-10.6169880271

text: uplimit=25; downlimit=0

Subjects
AGRICULTURE | ANIMAL BREEDING AND GENETICS | ANIMAL SCIENCE | ANIMALS/VERTEBRATES | Anoxypristis cuspidata | BIOLOGICAL CLASSIFICATION | BIOSPHERE | Carcharhinus leucas | Close-kin mark-recapture | EARTH SCIENCE | ECOLOGICAL DYNAMICS | ENDANGERED SPECIES | Euryhaline elasmobranchs | Eusphyra blochii | FISH | Glaucostegus typus | Glyphis garricki | Glyphis glyphis | Himantura uarnak | MIGRATORY RATES/ROUTES | Negaprion acutidens | Pateobatis hortlei | Population genetics | Pristis clavata | Pristis pristis | Rhizoprionodon taylori | SHARKS/RAYS/CHIMAERAS | SPECIES/POPULATION INTERACTIONS | SURVIVAL RATES | Urogymnus acanthobothrium | Urogymnus dalyensis | biota |

User Contributed Tags    

Login to tag this record with meaningful keywords to make it easier to discover

Other Information
(DATA ACCESS - Euryhaline elasmobranch genetics sequence index accession/run numbers (for search in Genbank, Sequence Read Archive))

uri : https://data.imas.utas.edu.au/attachments/f7d3a11e-bd2b-4d8d-af3d-d2fc3a058339/Euryhaline_elasmo_genetics_sequence_index.csv

(PUBLICATION: Complete mitochondrial genome of the endangered narrow sawfish Anoxypristis cuspidata (Rajiformes: Pristidae))

uri : https://data.imas.utas.edu.au/attachments/f7d3a11e-bd2b-4d8d-af3d-d2fc3a058339/Chen_etal_Anoxypristis_cuspidata_complete_mitochondrial_genome_early_online.pdf

(ASSOCIATED DATA ACCESS - KP233202 (Genbank))

uri : https://www.ncbi.nlm.nih.gov/nuccore/KP233202

(PUBLICATION: Complete mitochondrial genome of the Critically Endangered Smalltooth Sawfish Pristis pectinata (Rajiformes: Pristidae))

uri : https://data.imas.utas.edu.au/attachments/f7d3a11e-bd2b-4d8d-af3d-d2fc3a058339/Chen_etal_Pristis_pectinata_complete_mitochondrial_genome_early_online.pdf

(ASSOCIATED DATA ACCESS - KP400584 (Genbank))

uri : https://www.ncbi.nlm.nih.gov/nuccore/KP400584

(PUBLICATION: Complete mitochondrial genome of the Critically Endangered speartooth shark Glyphis glyphis (Carcharhiniformes: Carcharhinidae))

uri : https://data.imas.utas.edu.au/attachments/f7d3a11e-bd2b-4d8d-af3d-d2fc3a058339/Chen_etal_Glyphis_glyphis_complete_mitochondrial_genome__2014.pdf

(ASSOCIATED DATA ACCESS - KF006312 (Genbank))

uri : https://www.ncbi.nlm.nih.gov/nuccore/KF006312

(PUBLICATION: Whole mitogenome of the Endangered dwarf sawfish Pristis clavata (Rajiformes: Pristidae))

uri : https://data.imas.utas.edu.au/attachments/f7d3a11e-bd2b-4d8d-af3d-d2fc3a058339/Feutry_etal_Pristis_clavata_complete_mitogenome_2015.pdf

(ASSOCIATED DATA ACCESS - KF381507 (Genbank))

uri : https://www.ncbi.nlm.nih.gov/nuccore/KF381507

(PUBLICATION: Complete mitogenome of the graceful shark Carcharhinus amblyrhynchoides (Carcharhiniformes: Carcharhinidae))

uri : https://data.imas.utas.edu.au/attachments/f7d3a11e-bd2b-4d8d-af3d-d2fc3a058339/Feutry_etal_Carcharhinus_amblyrhynchoides_complete_mitogenome_2016.pdf

(ASSOCIATED DATA ACCESS - KF956523 (Genbank))

uri : https://www.ncbi.nlm.nih.gov/nuccore/KF956523

(PUBLICATION: Complete mitogenomic sequence of the Critically Endangered northern river shark Glyphis garricki (Carcharhiniformes: Carcharhinidae))

uri : https://data.imas.utas.edu.au/attachments/f7d3a11e-bd2b-4d8d-af3d-d2fc3a058339/Feutry_etal_Glyphis_garricki_complete_mitogenome_2015.pdf

(ASSOCIATED DATA ACCESS - KF646786 (Genbank))

uri : https://www.ncbi.nlm.nih.gov/nuccore/KF646786

(PUBLICATION: Complete mitochondrial genome of the Freshwater Whipray Himantura dalyensis)

uri : https://data.imas.utas.edu.au/attachments/f7d3a11e-bd2b-4d8d-af3d-d2fc3a058339/Feutry_etal_Himantura_dalyensis_complete_mitogenome_2016.pdf

(ASSOCIATED DATA ACCESS - KM244769 (Genbank))

uri : https://www.ncbi.nlm.nih.gov/nuccore/KM244769

(PUBLICATION: Complete mitochondrial genome of the Pigeye Shark Carcharhinus amboinensis (Carcharhiniformes: Carcharhinidae))

uri : https://data.imas.utas.edu.au/attachments/f7d3a11e-bd2b-4d8d-af3d-d2fc3a058339/Feutry_etal_Carcharhinus_amboinensis_complete_mitogenome_2016.pdf

(ASSOCIATED DATA ACCESS - KM921745 (Genbank))

uri : https://www.ncbi.nlm.nih.gov/nuccore/KM921745

(PUBLICATION: The phylogenomic position of the Winghead Shark Eusphyra blochii (Carcharhiniformes, Sphyrnidae) inferred from the mitochondrial genome)

uri : https://data.imas.utas.edu.au/attachments/f7d3a11e-bd2b-4d8d-af3d-d2fc3a058339/Feutry_etal_Eusphyra_blochii_phylogenomic_position_2016.pdf

(ASSOCIATED DATA ACCESS - KU892590 (Genbank))

uri : https://www.ncbi.nlm.nih.gov/nuccore/KU892590

(PUBLICATION: Mitogenomics of the Speartooth Shark challenges ten years of control region sequencing)

uri : https://data.imas.utas.edu.au/attachments/f7d3a11e-bd2b-4d8d-af3d-d2fc3a058339/Feutry_etal_Mitogenomics_speartooth_shark_challenges_2014.pdf

(PUBLICATION: Inferring contemporary and historical genetic connectivity from juveniles)

uri : https://data.imas.utas.edu.au/attachments/f7d3a11e-bd2b-4d8d-af3d-d2fc3a058339/Feutry_etal_Inferring_contemporary_historical_connectivity_juveniles_2017.pdf

(PUBLICATION: Whole mitogenome sequencing refines population structure of the Critically Endangered sawfish Pristis pristis)

uri : https://data.imas.utas.edu.au/attachments/f7d3a11e-bd2b-4d8d-af3d-d2fc3a058339/Feutry_etal_Pristis_pristis_mitogenomicspopulation_structure_2015.pdf

(NESP Project A1 [ANDS RDA record])

purl : http://purl.org/au-research/grants/nesp/mb/a1

global : e42486aa-40d8-4fb0-96fd-f3c0cc246fd9

Identifiers
  • global : f7d3a11e-bd2b-4d8d-af3d-d2fc3a058339
Similar data you may be interested in: