Data

Eukaryote Composition SE Queensland 2010

Commonwealth Scientific and Industrial Research Organisation
Chariton, Anthony
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.4225/08/52DF4D8008B99&rft.title=Eukaryote Composition SE Queensland 2010&rft.identifier=https://doi.org/10.4225/08/52DF4D8008B99&rft.publisher=Commonwealth Scientific and Industrial Research Organisation&rft.description=125 samples of benthic eukaryotic communities from SE Queensland. Samples were collected from the Noosa, Maroochydore, Pine, Logan and Currumbin estuaries in February 2010. Five sites per estuary, with 5 samples per site. 18S rRNA using the following primers:All18SF-TGGTGCATGGCCGTTCTTAGT and All18SR-CATCTAAGGGCATCACAGACC Lineage: DNA was extracted from 1 g of sediment for each sample.Data was produced using one plate of 454 GFLX Titanium.The provided data was processed using Amplicon Pyrosequence Denoising Program (ADPD) (Morgan et al. 2012). Taxonomy was inferred using the RDP classifier with the SILVA 18S rRNA database (release 113) .&rft.creator=Chariton, Anthony &rft.date=2014&rft.edition=v1&rft_rights=CSIRO Data Licence https://research.csiro.au/dap/licences/csiro-data-licence/&rft_rights=Data is accessible online and may be reused in accordance with licence conditions&rft_rights=All Rights (including copyright) CSIRO Australia 2014.&rft_subject=Metabarcoding&rft_subject=ecogenomics&rft_subject=18S rDNA, amplicon&rft_subject=estuary&rft_subject=sediment&rft_subject=Environmental assessment and monitoring&rft_subject=Environmental management&rft_subject=ENVIRONMENTAL SCIENCES&rft.type=dataset&rft.language=English Access the data
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125 samples of benthic eukaryotic communities from SE Queensland. Samples were collected from the Noosa, Maroochydore, Pine, Logan and Currumbin estuaries in February 2010. Five sites per estuary, with 5 samples per site.

18S rRNA using the following primers:
All18SF-TGGTGCATGGCCGTTCTTAGT and All18SR-CATCTAAGGGCATCACAGACC






Lineage: DNA was extracted from 1 g of sediment for each sample.
Data was produced using one plate of 454 GFLX Titanium.
The provided data was processed using Amplicon Pyrosequence Denoising Program (ADPD) (Morgan et al. 2012). Taxonomy was inferred using the RDP classifier with the SILVA 18S rRNA database (release 113) .

Available: 2014-01-22

Data time period: 2010-02-10 to 2010-03-03

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Subjects
18S rDNA, amplicon | Environmental Sciences | Environmental Assessment and Monitoring | Environmental Management | Metabarcoding | ecogenomics | estuary | sediment |

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Identifiers
ACN 633 798 857