Data

Establishing Guideline Values for Copper Toxicity to Marine Microbiomes

Australian Ocean Data Network
Australian Institute of Marine Science (AIMS)
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=http://catalogue-aodn.prod.aodn.org.au/geonetwork/srv/eng/search?uuid=a5de0c5c-edbf-4bd2-8715-a23f22d3a2d7&rft.title=Establishing Guideline Values for Copper Toxicity to Marine Microbiomes&rft.identifier=http://catalogue-aodn.prod.aodn.org.au/geonetwork/srv/eng/search?uuid=a5de0c5c-edbf-4bd2-8715-a23f22d3a2d7&rft.publisher=Australian Institute of Marine Science (AIMS)&rft.description=This data collection consists of water quality measurements, nutrient data and measured copper concentrations associated with an experiment exploring the effects of copper on seawater microbial communities to establish guideline values for copper toxicity to seawater microbiomes. Seawater for the experiment was collected from the AIMS jetty (19°16'38.4S 147°03'32.1E) in December 2020 and subsequently used in a 48-h exposure experiment. Water quality measurements (dissolved oxygen, pH and salinity) and water samples for nutrients (dissolved organic / inorganic carbon and nitrogen) were taken at 0-h and 48-h, following standard AIMS procedures. Representative water samples from the nominal experimental treatments (0, 0.1, 0.3, 1, 3, 10, 30, 100, 300 and 1000 µg L-1) were sent to Townsville Laboratory Services for dissolved copper quantification. Data was entered into excel. For full methodological and analytical details please refer to the full research publication, Thomas et al. (in press) its supplementary materials and the associated GitHub repository (GitHub - MarieCThomas/Copper.microbiome: Establishing guideline values for copper toxicity to marine microbiomes). Additionally, raw sequencing data can be found in the NCBI Sequence Read Archives under BioProject number PRJNA983933.Maintenance and Update Frequency: asNeededStatement: Analytical chemistry techniques outlined in the QA/QC manual of the Great Barrier Reef Marine Monitoring Program (qaqc with references as text (gbrmpa.gov.au)) were followed to ensure data quality.&rft.creator=Australian Institute of Marine Science (AIMS) &rft.date=2024&rft.coverage=westlimit=147.05534934997561; southlimit=-19.266424380723098; eastlimit=147.05534934997561; northlimit=-19.266424380723098&rft.coverage=westlimit=147.05534934997561; southlimit=-19.266424380723098; eastlimit=147.05534934997561; northlimit=-19.266424380723098&rft.coverage=westlimit=147.05895423889163; southlimit=-19.276633048397933; eastlimit=147.05895423889163; northlimit=-19.276633048397933&rft.coverage=westlimit=147.05895423889163; southlimit=-19.276633048397933; eastlimit=147.05895423889163; northlimit=-19.276633048397933&rft_rights= http://creativecommons.org/licenses/by-nc/3.0/au/&rft_rights=http://i.creativecommons.org/l/by-nc/3.0/au/88x31.png&rft_rights=WWW:LINK-1.0-http--related&rft_rights=License Graphic&rft_rights=Creative Commons Attribution-NonCommercial 3.0 Australia License&rft_rights=http://creativecommons.org/international/au/&rft_rights=WWW:LINK-1.0-http--related&rft_rights=WWW:LINK-1.0-http--related&rft_rights=License Text&rft_rights=Use Limitation: All AIMS data, products and services are provided as is and AIMS does not warrant their fitness for a particular purpose or non-infringement. While AIMS has made every reasonable effort to ensure high quality of the data, products and services, to the extent permitted by law the data, products and services are provided without any warranties of any kind, either expressed or implied, including without limitation any implied warranties of title, merchantability, and fitness for a particular purpose or non-infringement. AIMS make no representation or warranty that the data, products and services are accurate, complete, reliable or current. To the extent permitted by law, AIMS exclude all liability to any person arising directly or indirectly from the use of the data, products and services.&rft_rights=Attribution: Format for citation of metadata sourced from Australian Institute of Marine Science (AIMS) in a list of reference is as follows: Australian Institute of Marine Science (AIMS). (2023). Establishing Guideline Values for Copper Toxicity to Marine Microbiomes. https://apps.aims.gov.au/metadata/view/a5de0c5c-edbf-4bd2-8715-a23f22d3a2d7, accessed[date-of-access].&rft_rights=Creative Commons Attribution-NonCommercial 3.0 Australia License http://creativecommons.org/licenses/by-nc/3.0/au&rft_subject=oceans&rft_subject=Amplicon&rft.type=dataset&rft.language=English Access the data
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Use Limitation: All AIMS data, products and services are provided "as is" and AIMS does not warrant their fitness for a particular purpose or non-infringement. While AIMS has made every reasonable effort to ensure high quality of the data, products and services, to the extent permitted by law the data, products and services are provided without any warranties of any kind, either expressed or implied, including without limitation any implied warranties of title, merchantability, and fitness for a particular purpose or non-infringement. AIMS make no representation or warranty that the data, products and services are accurate, complete, reliable or current. To the extent permitted by law, AIMS exclude all liability to any person arising directly or indirectly from the use of the data, products and services.

Attribution: Format for citation of metadata sourced from Australian Institute of Marine Science (AIMS) in a list of reference is as follows: "Australian Institute of Marine Science (AIMS). (2023). Establishing Guideline Values for Copper Toxicity to Marine Microbiomes. https://apps.aims.gov.au/metadata/view/a5de0c5c-edbf-4bd2-8715-a23f22d3a2d7, accessed[date-of-access]".

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Contact Information

reception@aims.gov.au
adc@aims.gov.au

Brief description

This data collection consists of water quality measurements, nutrient data and measured copper concentrations associated with an experiment exploring the effects of copper on seawater microbial communities to establish guideline values for copper toxicity to seawater microbiomes. Seawater for the experiment was collected from the AIMS jetty (19°16'38.4"S 147°03'32.1"E) in December 2020 and subsequently used in a 48-h exposure experiment. Water quality measurements (dissolved oxygen, pH and salinity) and water samples for nutrients (dissolved organic / inorganic carbon and nitrogen) were taken at 0-h and 48-h, following standard AIMS procedures. Representative water samples from the nominal experimental treatments (0, 0.1, 0.3, 1, 3, 10, 30, 100, 300 and 1000 µg L-1) were sent to Townsville Laboratory Services for dissolved copper quantification. Data was entered into excel.


For full methodological and analytical details please refer to the full research publication, Thomas et al. (in press) its supplementary materials and the associated GitHub repository (GitHub - MarieCThomas/Copper.microbiome: Establishing guideline values for copper toxicity to marine microbiomes). Additionally, raw sequencing data can be found in the NCBI Sequence Read Archives under BioProject number PRJNA983933.

Lineage

Maintenance and Update Frequency: asNeeded
Statement: Analytical chemistry techniques outlined in the QA/QC manual of the Great Barrier Reef Marine Monitoring Program (qaqc with references as text (gbrmpa.gov.au)) were followed to ensure data quality.

Notes

Credit
Thomas, MC. Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, University of Queensland & Australian Institute of Marine Science (AIMS), Australia
Credit
Waugh, G. Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, University of Queensland & AIMS, Australia
Credit
Webster, NS. Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, University of Queensland & Australian Antarctic Division & AIMS, Australia
Credit
Rinke, C. Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, University of Queensland, Australia
Credit
Fisher, R. AIMS, Australia
Credit
Luter, HM. AIMS, Australia
Credit
Vanwonterghem, I. Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, University of Queensland, Australia
Credit
Negri, AP. AIMS, Australia

Modified: 03 2024

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147.05535,-19.26642

147.05534934998,-19.266424380723

147.05895,-19.27663

147.05895423889,-19.276633048398

text: westlimit=147.05534934997561; southlimit=-19.266424380723098; eastlimit=147.05534934997561; northlimit=-19.266424380723098

text: westlimit=147.05895423889163; southlimit=-19.276633048397933; eastlimit=147.05895423889163; northlimit=-19.276633048397933

Subjects
Amplicon | oceans |

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Other Information
nutrient data

uri : https://api.aims.gov.au/data-v2.0/a5de0c5c-edbf-4bd2-8715-a23f22d3a2d7/files/nutrients_CuExp_AIMS metadata record.xlsx

measured copper data

uri : https://api.aims.gov.au/data-v2.0/a5de0c5c-edbf-4bd2-8715-a23f22d3a2d7/files/measured copper data_CuExp_AIMS metadata record.xlsx

Thomas, M. C., Waugh, G., Vanwonterghem, I., Webster, N. S., Rinke, C., Fisher, R., Luter, H. M., & Negri, A. P. (2023). Protecting the invisible: Establishing guideline values for copper toxicity to marine microbiomes. Science of The Total Environment, 904, 166658. https://doi.org/10.1016/j.scitotenv.2023.166658

doi : https://doi.org/10.1016/j.scitotenv.2023.166658

water quality data

uri : https://api.aims.gov.au/data-v2.0/a5de0c5c-edbf-4bd2-8715-a23f22d3a2d7/files/water quality_CuExp_AIMS metadata record.xlsx

R scripts

uri : https://github.com/MarieCThomas/Copper.microbiome

NCBI BioProject PRJNA983933 - Raw sequence reads

uri : https://www.ncbi.nlm.nih.gov/bioproject/PRJNA983933

Identifiers
  • global : a5de0c5c-edbf-4bd2-8715-a23f22d3a2d7
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