Data

DArTSeq raw data for the oat lines

Commonwealth Scientific and Industrial Research Organisation
Nguyen, Duong ; Lewis, David ; Henningsen, Eva ; Mago, Rohit ; Sperschneider, Jana ; Shahryar, Kianian ; Dodds, Peter ; Figueroa, Melania
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Creative Commons Attribution 4.0 International Licence
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Data is accessible online and may be reused in accordance with licence conditions

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DArTSeq raw data for two oat crown rust differential sets commonly used in North America (n = 40) and Australia (n = 47), respectively.
Lineage: DArTSeq genotyping of oat lines was performed by Diversity Arrays Technology Pty Ltd. (https://www.diversityarrays.com/) (Canberra, Australia) using restriction enzymes PstI and HpaII with markers generated in two formats: SilicoDArT (presence/absence variants) and SNPs. The sequences of the DArT markers were aligned to the reference genome sequence of Avena sativa OT3098 v2 and Sang using BLAST (Altschul et al. 1990), with a threshold of an expected value (E) less than 5e-7 and a sequence identity greater than 70%.

Available: 2024-11-12

Data time period: 2022-10-10 to 2024-05-01

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158.7758,-11.3325 158.7758,-43.0001 110.7555,-43.0001 110.7555,-11.3325 158.7758,-11.3325

134.76565,-27.1663

Subjects
Agricultural, Veterinary and Food Sciences | Biological Sciences | Bioinformatics and Computational Biology | Crop and Pasture Improvement (Incl. Selection and Breeding) | Crop and Pasture Production | DArTSeq | Oat | Plant Biology | Plant Pathology | Sequence Analysis | rust | virulence |

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Grains Research & Development Corporation (GRDC) : CSP2204-007RTX

Identifiers
ACN 633 798 857