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Bacillus Carbohydrate Metabolism Protvec model

Flinders University
James G Mitchell (Aggregated by) Jody C. McKerral (Aggregated by) Robert Edwards (Aggregated by) Susie Grigson (Aggregated by)
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.25451/flinders.19770379.v4&rft.title=Bacillus Carbohydrate Metabolism Protvec model&rft.identifier=https://doi.org/10.25451/flinders.19770379.v4&rft.publisher=Flinders University&rft.description=Protvec model  trained using 8,743 sequences from the Genome Taxonomy Database (GTDB). Sequences were filtered to remove sequences containing 'X', sequences shorter than 30 amino acids and sequences longer than 1024 amino acids.    Training used a vector size of 100 and a context size of 25 to produce a dictionary object containing a 100-dimensional vector for each 3-mer present in the training data.  Model is stored as a .pkl file which can be imported using the Python pickle module.&rft.creator=James G Mitchell&rft.creator=Jody C. McKerral&rft.creator=Robert Edwards&rft.creator=Susie Grigson&rft.date=2022&rft_rights=REUSABLE-FOR-ANY-PURPOSE-(CC-BY)&rft_subject=Protvec&rft_subject=Sequence embedding&rft_subject=Bioinformatics&rft_subject=Bioinformatics and computational biology not elsewhere classified&rft.type=dataset&rft.language=English Access the data
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Protvec model  trained using 8,743 sequences from the Genome Taxonomy Database (GTDB). Sequences were filtered to remove sequences containing 'X', sequences shorter than 30 amino acids and sequences longer than 1024 amino acids. 

 

Training used a vector size of 100 and a context size of 25 to produce a dictionary object containing a 100-dimensional vector for each 3-mer present in the training data. 


Model is stored as a .pkl file which can be imported using the Python pickle module.

Issued: 2022-05-16

Created: 2022-05-21

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Bioinformatics | Bioinformatics and computational biology not elsewhere classified | Protvec | Sequence embedding |

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