Data

An R model to calculate the environmental optima for a species response curve

Australian Antarctic Division
Ashcroft, M. ; ASHCROFT, MICHAEL
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=http://data.aad.gov.au/metadata/AAS_4046_Temperature_Optima_Model&rft.title=An R model to calculate the environmental optima for a species response curve&rft.identifier=http://data.aad.gov.au/metadata/AAS_4046_Temperature_Optima_Model&rft.publisher=Australian Antarctic Data Centre&rft.description=This record contains the R code for an R2OpenBugs Bayesian model that fits penalised splines to a species response curve and then estimates the means and 95% credible intervals for the optimum, peak, upper and lower limits, and niche breadth. Two response curves can then be compared and the probability that one curve has an optima greater than the other can then be calculated. Six files are included: Two R2OpenBugs models (one logit transformed to deal with presence-absence data, and one untransformed), the R code for running the models on example data, and 3 files containing the relevant example data (Antarctic mosses). More information can be found in Ashcroft et al. (2016) Ecological Informatics 34: 35–43, which should be cited in any publications using this model.Progress Code: completedStatement: The dates provided in temporal coverage are those of the start and end dates of the project. For more information see the readme file in the download, or the referenced paper.&rft.creator=Ashcroft, M. &rft.creator=ASHCROFT, MICHAEL &rft.date=2017&rft.coverage=westlimit=-180; southlimit=-70; eastlimit=180; northlimit=-60&rft.coverage=westlimit=-180; southlimit=-70; eastlimit=180; northlimit=-60&rft_rights=The model is available to be used as is or modified to suit other datasets. Please cite Ashcroft et al. (2016) Ecological Informatics 34: 35–43 in any resulting publications.&rft_rights=Attribution 4.0 International (CC BY 4.0) https://creativecommons.org/licenses/by/4.0/legalcode&rft_rights=This data set conforms to the CCBY Attribution License (http://creativecommons.org/licenses/by/4.0/). Please follow instructions listed in the citation reference provided at http://data.aad.gov.au/aadc/metadata/citation.cfm?entry_id=AAS_4046_Temperature_Optima_Model when using these data.&rft_rights=This metadata record is publicly available.&rft_subject=biota&rft_subject=environment&rft_subject=EARTH SCIENCE SERVICES > MODELS > CLIMATE CHANGE IMPACT ASSESSMENT MODELS&rft_subject=EARTH SCIENCE > BIOSPHERE > ECOSYSTEMS > TERRESTRIAL ECOSYSTEMS&rft_subject=MODELS&rft_subject=AMD/AU&rft_subject=AMD&rft_subject=CEOS&rft_subject=GEOGRAPHIC REGION > POLAR&rft_subject=CONTINENT > ANTARCTICA&rft.type=dataset&rft.language=English Access the data
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Attribution 4.0 International (CC BY 4.0)
https://creativecommons.org/licenses/by/4.0/legalcode

The model is available to be used as is or modified to suit other datasets. Please cite Ashcroft et al. (2016) Ecological Informatics 34: 35–43 in any resulting publications.

This data set conforms to the CCBY Attribution License (http://creativecommons.org/licenses/by/4.0/).

Please follow instructions listed in the citation reference provided at http://data.aad.gov.au/aadc/metadata/citation.cfm?entry_id=AAS_4046_Temperature_Optima_Model when using these data.

This metadata record is publicly available.

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This record contains the R code for an R2OpenBugs Bayesian model that fits penalised splines to a species response curve and then estimates the means and 95% credible intervals for the optimum, peak, upper and lower limits, and niche breadth. Two response curves can then be compared and the probability that one curve has an optima greater than the other can then be calculated. Six files are included: Two R2OpenBugs models (one logit transformed to deal with presence-absence data, and one untransformed), the R code for running the models on example data, and 3 files containing the relevant example data (Antarctic mosses). More information can be found in Ashcroft et al. (2016) Ecological Informatics 34: 35–43, which should be cited in any publications using this model.

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Progress Code: completed
Statement: The dates provided in temporal coverage are those of the start and end dates of the project. For more information see the readme file in the download, or the referenced paper.

Data time period: 2012-07-01 to 2017-06-30

This dataset is part of a larger collection

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180,-60 180,-70 0,-70 -180,-70 -180,-60 0,-60 180,-60

0,-65

text: westlimit=-180; southlimit=-70; eastlimit=180; northlimit=-60

Subjects
AMD | AMD/AU | CEOS | CONTINENT > ANTARCTICA | EARTH SCIENCE > BIOSPHERE > ECOSYSTEMS > TERRESTRIAL ECOSYSTEMS | EARTH SCIENCE SERVICES > MODELS > CLIMATE CHANGE IMPACT ASSESSMENT MODELS | GEOGRAPHIC REGION > POLAR | MODELS | biota | environment |

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Other Information
Download the data (GET DATA)

uri : https://data.aad.gov.au/eds/4544/download

Public information for AAS project AAS_4046 (PROJECT HOME PAGE)

uri : https://projects.aad.gov.au/search_projects_results.cfm?project_no=AAS_4046

Citation reference for this metadata record and dataset. (VIEW RELATED INFORMATION)

uri : https://data.aad.gov.au/aadc/metadata/citation.cfm?entry_id=AAS_4046_Temperature_Optima_Model

Identifiers
  • global : AAS_4046_Temperature_Optima_Model