Data

An R model to calculate the environmental optima for a species response curve

Australian Antarctic Data Centre
ASHCROFT, MICHAEL
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.4225/15/5a0d0b47065c7&rft.title=An R model to calculate the environmental optima for a species response curve&rft.identifier=10.4225/15/5a0d0b47065c7&rft.publisher=Australian Antarctic Data Centre&rft.description=This record contains the R code for an R2OpenBugs Bayesian model that fits penalised splines to a species response curve and then estimates the means and 95% credible intervals for the optimum, peak, upper and lower limits, and niche breadth. Two response curves can then be compared and the probability that one curve has an optima greater than the other can then be calculated. Six files are included: Two R2OpenBugs models (one logit transformed to deal with presence-absence data, and one untransformed), the R code for running the models on example data, and 3 files containing the relevant example data (Antarctic mosses). More information can be found in Ashcroft et al. (2016) Ecological Informatics 34: 35–43, which should be cited in any publications using this model.&rft.creator=ASHCROFT, MICHAEL &rft.date=2017&rft.coverage=northlimit=-60; southlimit=-70; westlimit=-180; eastLimit=180; projection=WGS84&rft.coverage=northlimit=-60; southlimit=-70; westlimit=-180; eastLimit=180; projection=WGS84&rft_rights=This data set conforms to the CCBY Attribution License (http://creativecommons.org/licenses/by/4.0/). Please follow instructions listed in the citation reference provided at http://data.aad.gov.au/aadc/metadata/citation.cfm?entry_id=AAS_4046_Temperature_Optima_Model when using these data.&rft_subject=biota&rft_subject=environment&rft_subject=CLIMATE CHANGE IMPACT ASSESSMENT MODELS&rft_subject=EARTH SCIENCE SERVICES&rft_subject=MODELS&rft_subject=TERRESTRIAL ECOSYSTEMS&rft_subject=EARTH SCIENCE&rft_subject=BIOSPHERE&rft_subject=GEOGRAPHIC REGION > POLAR&rft_subject=CONTINENT > ANTARCTICA&rft_place=Hobart&rft.type=dataset&rft.language=English Access the data
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This data set conforms to the CCBY Attribution License (http://creativecommons.org/licenses/by/4.0/). Please follow instructions listed in the citation reference provided at http://data.aad.gov.au/aadc/metadata/citation.cfm?entry_id=AAS_4046_Temperature_Optima_Model when using these data.

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The model is available to be used as is or modified to suit other datasets. Please cite Ashcroft et al. (2016) Ecological Informatics 34: 35–43 in any resulting publications.

Brief description

This record contains the R code for an R2OpenBugs Bayesian model that fits penalised splines to a species response curve and then estimates the means and 95% credible intervals for the optimum, peak, upper and lower limits, and niche breadth. Two response curves can then be compared and the probability that one curve has an optima greater than the other can then be calculated. Six files are included: Two R2OpenBugs models (one logit transformed to deal with presence-absence data, and one untransformed), the R code for running the models on example data, and 3 files containing the relevant example data (Antarctic mosses). More information can be found in Ashcroft et al. (2016) Ecological Informatics 34: 35–43, which should be cited in any publications using this model.

Issued: 2017-11-16

Data time period: 2012-07-01 to 2017-06-30

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180,-60 180,-70 0,-70 -180,-70 -180,-60 0,-60 180,-60

0,-65

text: northlimit=-60; southlimit=-70; westlimit=-180; eastLimit=180; projection=WGS84

Subjects
BIOSPHERE | CLIMATE CHANGE IMPACT ASSESSMENT MODELS | CONTINENT > ANTARCTICA | EARTH SCIENCE | EARTH SCIENCE SERVICES | GEOGRAPHIC REGION > POLAR | MODELS | TERRESTRIAL ECOSYSTEMS | biota | environment |

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AU-ANL:PEAU : http://nla.gov.au/nla.party-617536

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