Data

An R model to estimate the relative abundance of species from presence-absence data

Australian Antarctic Division
Ashcroft, M.B. ; ASHCROFT, MICHAEL B.
Viewed: [[ro.stat.viewed]] Cited: [[ro.stat.cited]] Accessed: [[ro.stat.accessed]]
ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.4225/15/5a26170cc27ef&rft.title=An R model to estimate the relative abundance of species from presence-absence data&rft.identifier=10.4225/15/5a26170cc27ef&rft.publisher=Australian Antarctic Data Centre&rft.description=This record contains R code for a model that estimates the relative abundance of species using only presence-absence data. It is demonstrated using two examples with Antarctic mosses: One that explains spatial patterns along a water availability gradient, and one that explains temporal changes between 2000 and 2013. It could be modified to work with other species or datasets.Progress Code: completed&rft.creator=Ashcroft, M.B. &rft.creator=ASHCROFT, MICHAEL B. &rft.date=2017&rft.coverage=westlimit=107.92969; southlimit=-67.47492; eastlimit=114.08203; northlimit=-65.44&rft.coverage=westlimit=107.92969; southlimit=-67.47492; eastlimit=114.08203; northlimit=-65.44&rft_rights=These data are publicly available for download from the provided URL. The spatial application of the model is published and is available in Ashcroft et al. 2017. The temporal application of the model is currently under review and is expected to be made available in early 2018.&rft_rights=Attribution 4.0 International (CC BY 4.0) https://creativecommons.org/licenses/by/4.0/legalcode&rft_rights=The model is available to be used on other datasets. Resulting publications should cite: Ashcroft MB, King DH, Raymond B, Turnbull JD, Wasley J, Robinson SA (2017) Moving beyond presence and absence when examining changes in species distributions. Global Change Biology 23: 2929–2940. This data set conforms to the CCBY Attribution License (http://creativecommons.org/licenses/by/4.0/). Please follow instructions listed in the citation reference provided at http://data.aad.gov.au/aadc/metadata/citation.cfm?entry_id=AAS_4046_Estimate_Abundance_Model when using these data.&rft_rights=This metadata record is publicly available.&rft_subject=biota&rft_subject=EARTH SCIENCE > BIOLOGICAL CLASSIFICATION > PLANTS > MOSSES/HORNWORTS/LIVERWORTS&rft_subject=EARTH SCIENCE > MODELS > DYNAMIC VEGETATION/ECOSYSTEM MODELS&rft_subject=Computer > Computer&rft_subject=MODELS&rft_subject=AMD/AU&rft_subject=CEOS&rft_subject=AMD&rft_subject=GEOGRAPHIC REGION > POLAR&rft_subject=CONTINENT > ANTARCTICA&rft.type=dataset&rft.language=English Access the data
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Attribution 4.0 International (CC BY 4.0)
https://creativecommons.org/licenses/by/4.0/legalcode

These data are publicly available for download from the provided URL. The spatial application of the model is published and is available in Ashcroft et al. 2017. The temporal application of the model is currently under review and is expected to be made available in early 2018.

The model is available to be used on other datasets. Resulting publications should cite: Ashcroft MB, King DH, Raymond B, Turnbull JD, Wasley J, Robinson SA (2017) Moving beyond presence and absence when examining changes in species distributions. Global Change Biology 23: 2929–2940. This data set conforms to the CCBY Attribution License (http://creativecommons.org/licenses/by/4.0/). Please follow instructions listed in the citation reference provided at http://data.aad.gov.au/aadc/metadata/citation.cfm?entry_id=AAS_4046_Estimate_Abundance_Model when using these data.

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This record contains R code for a model that estimates the relative abundance of species using only presence-absence data. It is demonstrated using two examples with Antarctic mosses: One that explains spatial patterns along a water availability gradient, and one that explains temporal changes between 2000 and 2013. It could be modified to work with other species or datasets.

Lineage

Progress Code: completed

Data time period: 2000-01-01 to 2013-03-01

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107.92969,-67.47492 114.08203,-67.47492 114.08203,-65.44 107.92969,-65.44 107.92969,-67.47492

111.00586,-66.45746

text: westlimit=107.92969; southlimit=-67.47492; eastlimit=114.08203; northlimit=-65.44

Subjects
AMD | AMD/AU | CEOS | CONTINENT > ANTARCTICA | Computer > Computer | EARTH SCIENCE > BIOLOGICAL CLASSIFICATION > PLANTS > MOSSES/HORNWORTS/LIVERWORTS | EARTH SCIENCE > MODELS > DYNAMIC VEGETATION/ECOSYSTEM MODELS | GEOGRAPHIC REGION > POLAR | MODELS | biota |

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Other Information
Download the dataset (GET DATA > DIRECT DOWNLOAD)

url : https://data.aad.gov.au/eds/4571/download

Public information for AAS project AAS_4046 (PROJECT HOME PAGE)

url : https://projects.aad.gov.au/report_project_public.cfm?project_no=AAS_4046

Citation reference for this metadata record and dataset. (VIEW RELATED INFORMATION)

url : https://data.aad.gov.au/aadc/metadata/citation.cfm?entry_id=AAS_4046_Estimate_Abundance_Model

Identifiers
ACN 633 798 857