Data

An R-based tool for identifying sex-linked markers from Restriction site-Associated DNA sequencing with applications to elasmobranch conservation

Commonwealth Scientific and Industrial Research Organisation
Devloo-Delva, Floriaan ; Gosselin, Thierry ; Butcher, Paul ; Grewe, Peter ; Huveneers, Charlie ; Thomson, Robin ; Werry, Jonathan ; Feutry, Pierre
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.25919/c9mm-8960&rft.title=An R-based tool for identifying sex-linked markers from Restriction site-Associated DNA sequencing with applications to elasmobranch conservation&rft.identifier=https://doi.org/10.25919/c9mm-8960&rft.publisher=Commonwealth Scientific and Industrial Research Organisation&rft.description=The data was collected to study genetic markers that are located on sex chromosomes and develop and R functions to efficiently identify such markers.The raw silico and SNP markers are provided. The Rmarkdown describes the workflow of the R function with the example White Shark data, the BLAST results of sex-linked markers against reference genomes, the conditions and results for the PCR-based sex identification, and the accuracy analysis of the function.Lineage: The SNP data were created following the DArTseq protocol (Diversity Arrays Technologies, Canberra). &rft.creator=Devloo-Delva, Floriaan &rft.creator=Gosselin, Thierry &rft.creator=Butcher, Paul &rft.creator=Grewe, Peter &rft.creator=Huveneers, Charlie &rft.creator=Thomson, Robin &rft.creator=Werry, Jonathan &rft.creator=Feutry, Pierre &rft.date=2023&rft.edition=v1&rft_rights=Creative Commons Attribution Noncommercial-Share Alike 4.0 Licence https://creativecommons.org/licenses/by-nc-sa/4.0/&rft_rights=Data is accessible online and may be reused in accordance with licence conditions&rft_rights=All Rights (including copyright) CSIRO 2023.&rft_subject=RADseq&rft_subject=ddRAD&rft_subject=DArTseq&rft_subject=SNPs&rft_subject=sex-chromosomes&rft_subject=Fish physiology and genetics&rft_subject=Fisheries sciences&rft_subject=AGRICULTURAL, VETERINARY AND FOOD SCIENCES&rft_subject=Developmental genetics (incl. sex determination)&rft_subject=Genetics&rft_subject=BIOLOGICAL SCIENCES&rft_subject=Genomics&rft.type=dataset&rft.language=English Access the data
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Creative Commons Attribution Noncommercial-Share Alike 4.0 Licence
https://creativecommons.org/licenses/by-nc-sa/4.0/

Data is accessible online and may be reused in accordance with licence conditions

All Rights (including copyright) CSIRO 2023.

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The data was collected to study genetic markers that are located on sex chromosomes and develop and R functions to efficiently identify such markers.

The raw silico and SNP markers are provided. The Rmarkdown describes the workflow of the R function with the example White Shark data, the BLAST results of sex-linked markers against reference genomes, the conditions and results for the PCR-based sex identification, and the accuracy analysis of the function.
Lineage: The SNP data were created following the DArTseq protocol (Diversity Arrays Technologies, Canberra).

Available: 2023-09-26

Data time period: 2005-01-01 to 2016-01-01

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Subjects
Agricultural, Veterinary and Food Sciences | Biological Sciences | DArTseq | Developmental Genetics (Incl. Sex Determination) | Fish Physiology and Genetics | Fisheries Sciences | Genetics | Genomics | RADseq | SNPs | ddRAD | sex-chromosomes |

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Identifiers
ACN 633 798 857