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Additional file 2 of Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome

The University of Western Australia
Edwards, Richard J. ; Field, Matt A. ; Ferguson, James M. ; Dudchenko, Olga ; Keilwagen, Jens ; Rosen, Benjamin D. ; Johnson, Gary S. ; Rice, Edward S. ; Hillier, La Deanna ; Hammond, Jillian M. ; Towarnicki, Samuel G. ; Omer, Arina ; Khan, Ruqayya ; Skvortsova, Ksenia ; Bogdanovic, Ozren ; Zammit, Robert A. ; Aiden, Erez Lieberman ; Warren, Wesley C. ; Ballard, J. William O.
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.6084/m9.figshare.14227951&rft.title=Additional file 2 of Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome&rft.identifier=10.6084/m9.figshare.14227951&rft.publisher=Figshare&rft.description=Additional file 2: Supplementary Table 1. Assembly statistics for China assembly stages and other dog genomes used in the study. Supplementary Table 2. Diploidocus statistics and ratings for China scaffolds during tidying. Supplementary Table 3. GeMoMa summary statistics and annotation comparisons. Supplementary Table 4. AMY2B short read mapping and estimated copy number in Basenji dogs. Supplementary Table 5. CanFam_Bas nuclear mitochondrial sequence (NUMT) fragments. Supplementary Table 6. CanFam_Bas nuclear mitochondrial sequences (NUMTs) merging fragments within 8 kb. Supplementary Table 7. Structural variant calls for Basenji and German Shepherd long read data versus three reference genomes. Supplementary Table 8. Dog breeds used for read mapping and SNV analysis. Supplementary Table 9. SRA runs for representative dog breeds from DBVDC.&rft.creator=Edwards, Richard J. &rft.creator=Field, Matt A. &rft.creator=Ferguson, James M. &rft.creator=Dudchenko, Olga &rft.creator=Keilwagen, Jens &rft.creator=Rosen, Benjamin D. &rft.creator=Johnson, Gary S. &rft.creator=Rice, Edward S. &rft.creator=Hillier, La Deanna &rft.creator=Hammond, Jillian M. &rft.creator=Towarnicki, Samuel G. &rft.creator=Omer, Arina &rft.creator=Khan, Ruqayya &rft.creator=Skvortsova, Ksenia &rft.creator=Bogdanovic, Ozren &rft.creator=Zammit, Robert A. &rft.creator=Aiden, Erez Lieberman &rft.creator=Warren, Wesley C. &rft.creator=Ballard, J. William O. &rft.date=2021&rft.relation=http://research-repository.uwa.edu.au/en/publications/78fabb61-0f08-4d02-8995-2c6fb57a51a1&rft_subject=Biological Sciences not elsewhere classified&rft_subject=Medicine&rft_subject=FOS: Biological sciences&rft_subject=Genetics&rft_subject=Ecology&rft_subject=Evolutionary Biology&rft_subject=Environmental Sciences not elsewhere classified&rft.type=dataset&rft.language=English Access the data
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Additional file 2: Supplementary Table 1. Assembly statistics for China assembly stages and other dog genomes used in the study. Supplementary Table 2. Diploidocus statistics and ratings for China scaffolds during tidying. Supplementary Table 3. GeMoMa summary statistics and annotation comparisons. Supplementary Table 4. AMY2B short read mapping and estimated copy number in Basenji dogs. Supplementary Table 5. CanFam_Bas nuclear mitochondrial sequence (NUMT) fragments. Supplementary Table 6. CanFam_Bas nuclear mitochondrial sequences (NUMTs) merging fragments within 8 kb. Supplementary Table 7. Structural variant calls for Basenji and German Shepherd long read data versus three reference genomes. Supplementary Table 8. Dog breeds used for read mapping and SNV analysis. Supplementary Table 9. SRA runs for representative dog breeds from DBVDC.

Notes

External Organisations
University of New South Wales; Australian National University; Garvan Institute of Medical Research; Rice University; Baylor College of Medicine; Julius Kühn Institute - Federal Research Centre for Cultivated Plants; Gyeongsangnam-do Agricultural Research and Extension Service; University of Missouri; University of Washington; University of Melbourne
Associated Persons
Richard J. Edwards (Creator); Olga Dudchenko (Creator); Ozren Bogdanovic (Creator)Matt A. Field (Creator); James M. Ferguson (Creator); Jens Keilwagen (Creator); Benjamin D. Rosen (Creator); Gary S. Johnson (Creator); Edward S. Rice (Creator); La Deanna Hillier (Creator); Jillian M. Hammond (Creator); Samuel G. Towarnicki (Creator); Arina Omer (Creator); Ruqayya Khan (Creator); Ksenia Skvortsova (Creator); Robert A. Zammit (Creator); Erez Lieberman Aiden (Creator); Wesley C. Warren (Creator); J. William O. Ballard (Creator)

Issued: 2021

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Biological Sciences not elsewhere classified | Ecology | Environmental Sciences not elsewhere classified | Evolutionary Biology | FOS: Biological sciences | Genetics | Medicine |

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