Additional file 1 of Unveiling molecular mechanisms and candidate genes for goss’s bacterial wilt and leaf blight resistance in corn through RNA-Seq analysis

Full description

Supplementary Material 1: Supplementary File 1, This Excel file contains eight sheets related to the transcriptomic analysis of gene expression in resistant and susceptible corn lines under different treatments with Clavibacter nebraskensis. Sheet 1 – Supplementary Table S1: Summary of the number of upregulated and downregulated genes identified in each of the six focal treatment comparisons using DESeq2. DEGs were defined based on an adjusted p-value (FDR) < 0.1 and an absolute log2 fold change >1.5. Sheet 2 – FPKM_allsamples: Normalized gene expression data (FPKM values) for all genes across the 18 RNA-seq samples, used as input for downstream analyses such as clustering and visualization. Sheets 3 –8– Full DEG Lists for Six Pairwise Comparisons. Each sheet provides the complete list of differentially expressed genes for one of the six treatment comparisons, including gene IDs, log2 fold changes, and adjusted p-values. The six comparisons are as follows: Sheet 3: 447BACT vs 447CTL, Sheet 4: 450BACT vs 450CTL, Sheet 5: 447DOAB vs 447CTL, Sheet 6: 450DOAB vs 450CTL, Sheet 7: 450DOAB vs 447DOAB and sheet 8: 450BACT vs 447BACT.

Notes

External Organisations
University of Manitoba; The University of Winnipeg; Tanta University; Texas A&M University

Associated Persons
Mohammad Sayari (Creator); Sara Victoria Good (Creator); Dimitri Trubetskoy (Creator); Mohamed El-Shetehy (Creator); Atta Soliman (Creator); Arash Kheirodin (Creator); Fouad Daayf (Creator)