Data

Additional file 1 of Succession and determinants of the early life nasopharyngeal microbiota in a South African birth cohort

The University of Western Australia
Claassen-Weitz, Shantelle ; Gardner-Lubbe, Sugnet ; Xia, Yao ; Mwaikono, Kilaza S. ; Mounaud, Stephanie Harris ; Nierman, William C. ; Workman, Lesley ; Zar, Heather J. ; Nicol, Mark P.
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.6084/m9.figshare.26594033&rft.title=Additional file 1 of Succession and determinants of the early life nasopharyngeal microbiota in a South African birth cohort&rft.identifier=10.6084/m9.figshare.26594033&rft.publisher=Figshare&rft.description=Additional file 1: Section A. Extended methods (Figure S1). Section B. Extended results - sequencing controls and sample selection (Figures S2-S7). Section C. Extended results - Figures S8-S19. Section D. Extended references. Table S1. RDP classifier implementation for DADA2 and SILVA version: ASV table. Table S2. RDP classifier implementation for DADA2 and SILVA version: taxonomic classification. Table S3. Metadata file: NP specimens. Table S4. Metadata file: Participants. Table S5. Differential abundance testing.&rft.creator=Claassen-Weitz, Shantelle &rft.creator=Gardner-Lubbe, Sugnet &rft.creator=Xia, Yao &rft.creator=Mwaikono, Kilaza S. &rft.creator=Mounaud, Stephanie Harris &rft.creator=Nierman, William C. &rft.creator=Workman, Lesley &rft.creator=Zar, Heather J. &rft.creator=Nicol, Mark P. &rft.date=2024&rft.relation=http://research-repository.uwa.edu.au/en/publications/2db0388d-9f2c-4387-b95c-7bb442a1dafb&rft_subject=Medicine&rft_subject=Biological Sciences not elsewhere classified&rft_subject=FOS: Biological sciences&rft_subject=Immunology&rft_subject=Microbiology&rft_subject=FOS: Clinical medicine&rft_subject=FOS: Health sciences&rft_subject=Infectious Diseases&rft_subject=Ecology&rft_subject=Cell Biology&rft_subject=Environmental Sciences not elsewhere classified&rft_subject=Cancer&rft.type=dataset&rft.language=English Access the data
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Additional file 1: Section A. Extended methods (Figure S1). Section B. Extended results - sequencing controls and sample selection (Figures S2-S7). Section C. Extended results - Figures S8-S19. Section D. Extended references. Table S1. RDP classifier implementation for DADA2 and SILVA version: ASV table. Table S2. RDP classifier implementation for DADA2 and SILVA version: taxonomic classification. Table S3. Metadata file: NP specimens. Table S4. Metadata file: Participants. Table S5. Differential abundance testing.

Notes

External Organisations
University of Cape Town; University of Stellenbosch; Edith Cowan University; J. Craig Venter Institute; Red Cross War Memorial Children's Hospital
Associated Persons
Shantelle Claassen-Weitz (Creator); Sugnet Gardner-Lubbe (Creator); Kilaza S. Mwaikono (Creator); Stephanie Harris Mounaud (Creator); William C. Nierman (Creator); Lesley Workman (Creator); Heather J. Zar (Creator)

Issued: 2024-08-14

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Biological Sciences not elsewhere classified | Cancer | Cell Biology | Ecology | Environmental Sciences not elsewhere classified | FOS: Biological sciences | FOS: Clinical medicine | FOS: Health sciences | Immunology | Infectious Diseases | Medicine | Microbiology |

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