Data

Abatus Microsatellites data set

Australian Ocean Data Network
Carrea, C., Burridge, C., King, C.K. and Miller, K. ; CARREA, CECILIA ; BURRIDGE, CHRISTOPHER ; KING, CATHERINE K. ; MILLER, KAREN
Viewed: [[ro.stat.viewed]] Cited: [[ro.stat.cited]] Accessed: [[ro.stat.accessed]]
ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=http://data.aad.gov.au/metadata/records/AAS_3051_AbatusMicrosatellites&rft.title=Abatus Microsatellites data set&rft.identifier=http://data.aad.gov.au/metadata/records/AAS_3051_AbatusMicrosatellites&rft.publisher=Australian Antarctic Data Centre&rft.description=The present data set corresponds to the genotypes for seven microsatellite markers for three Antarctic sea urchin species of the genus Abatus. Sea urchin individuals were collected in five sites separated by up to 5 km in the near-shore area surrounding Davis Station in the Vestfold Hills Region, East Antarctica. For each microsatellite loci, the size of each allele was scored (in base pairs) using the CEQ 8000 Genetic Analysis System software v.8.0. Fragments were separated on an automated sequencer (CEQ 8000, Beckman Coulter) in the Central Science Laboratory at University of Tasmania.Progress Code: completedStatement: Samples from sampling sites OF1 and OF2 were collected during the 2009/2010 summer season. Samples from sampling sites OF, OF3 and OF4 were collected during the 2012/2013 summer season. Depths at which samples were collected: OF1: 4.5-7.0 m deep OF2: 10-12 m deep OF, OF3, OF4 equal or less than 4 m deep. Original datasheet was reformatted to fit IPT Biodiversity.AQ standard. The new datasheet AbatusUrchin_microsatellites.csv provides the dataset ID, verbatim latitude and verbatim longitude that were converted to decimal latitude and longitude, also provided. Taxonomical organisation to the lowest taxonomical rank that could be determined, after matched in WoRMS (World Register of Marine Species). Also provides other parameters such as localisation, sampling depth, occurrence, and date of event.&rft.creator=Carrea, C., Burridge, C., King, C.K. and Miller, K. &rft.creator=CARREA, CECILIA &rft.creator=BURRIDGE, CHRISTOPHER &rft.creator=KING, CATHERINE K. &rft.creator=MILLER, KAREN &rft.date=2016&rft.coverage=westlimit=77.987556; southlimit=-68.584139; eastlimit=77.94931; northlimit=-68.565625&rft.coverage=westlimit=77.987556; southlimit=-68.584139; eastlimit=77.94931; northlimit=-68.565625&rft.coverage=uplimit=25; downlimit=0&rft.coverage=uplimit=25; downlimit=0&rft_rights=This metadata record is publicly available.&rft_rights=These data are publicly available for download from the provided URL. Copies of the referenced papers are also available for download from the provided URL to AAD staff only.&rft_rights= https://creativecommons.org/licenses/by/4.0/legalcode&rft_rights=This data set conforms to the CCBY Attribution License (http://creativecommons.org/licenses/by/4.0/). Please follow instructions listed in the citation reference provided at http://data.aad.gov.au/aadc/metadata/citation.cfm?entry_id=AAS_3051_AbatusMicrosatellites when using these data. http://creativecommons.org/licenses/by/4.0/).&rft_rights=Portable Network Graphic&rft_rights=https://i.creativecommons.org/l/by/3.0/88x31.png&rft_rights=Creative Commons by Attribution logo&rft_rights=Attribution 4.0 International (CC BY 4.0)&rft_rights=Legal code for Creative Commons by Attribution 4.0 International license&rft_rights=Attribution 4.0 International (CC BY 4.0)&rft_rights= https://creativecommons.org/licenses/by/4.0/legalcode&rft_subject=environment&rft_subject=biota&rft_subject=oceans&rft_subject=EARTH SCIENCE > BIOLOGICAL CLASSIFICATION > ANIMALS/INVERTEBRATES > ECHINODERMS > SEA URCHINS&rft_subject=EARTH SCIENCE > HUMAN DIMENSIONS > ENVIRONMENTAL IMPACTS > CONTAMINANT LEVELS/SPILLS&rft_subject=EARTH SCIENCE > OCEANS > WATER QUALITY > OCEAN CONTAMINANTS&rft_subject=EARTH SCIENCE > HUMAN DIMENSIONS > ENVIRONMENTAL IMPACTS > SEWAGE DISPOSAL&rft_subject=OUTFALL PIPE - DAVIS STATION&rft_subject=ADS > Automated DNA Sequencer&rft_subject=FIELD INVESTIGATION&rft_subject=FIELD SURVEYS&rft_subject=LABORATORY&rft_subject=AMD/AU&rft_subject=AMD&rft_subject=CEOS&rft_subject=GEOGRAPHIC REGION > POLAR&rft.type=dataset&rft.language=English Access the data
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https://creativecommons.org/licenses/by/4.0/legalcode

This data set conforms to the CCBY Attribution License (http://creativecommons.org/licenses/by/4.0/).

Please follow instructions listed in the citation reference provided at http://data.aad.gov.au/aadc/metadata/citation.cfm?entry_id=AAS_3051_AbatusMicrosatellites when using these data.
http://creativecommons.org/licenses/by/4.0/).

Attribution 4.0 International (CC BY 4.0)

https://creativecommons.org/licenses/by/4.0/legalcode

This metadata record is publicly available.

These data are publicly available for download from the provided URL.

Copies of the referenced papers are also available for download from the provided URL to AAD staff only.

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https://i.creativecommons.org/l/by/3.0/88x31.png

Creative Commons by Attribution logo

Attribution 4.0 International (CC BY 4.0)

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Brief description

The present data set corresponds to the genotypes for seven microsatellite markers for three Antarctic sea urchin species of the genus Abatus. Sea urchin individuals were collected in five sites separated by up to 5 km in the near-shore area surrounding Davis Station in the Vestfold Hills Region, East Antarctica. For each microsatellite loci, the size of each allele was scored (in base pairs) using the CEQ 8000 Genetic Analysis System software v.8.0. Fragments were separated on an automated sequencer (CEQ 8000, Beckman Coulter) in the Central Science Laboratory at University of Tasmania.

Lineage

Progress Code: completed
Statement: Samples from sampling sites OF1 and OF2 were collected during the 2009/2010 summer season. Samples from sampling sites OF, OF3 and OF4 were collected during the 2012/2013 summer season. Depths at which samples were collected: OF1: 4.5-7.0 m deep OF2: 10-12 m deep OF, OF3, OF4 equal or less than 4 m deep. Original datasheet was reformatted to fit IPT Biodiversity.AQ standard. The new datasheet "AbatusUrchin_microsatellites.csv" provides the dataset ID, verbatim latitude and verbatim longitude that were converted to decimal latitude and longitude, also provided. Taxonomical organisation to the lowest taxonomical rank that could be determined, after matched in WoRMS (World Register of Marine Species). Also provides other parameters such as localisation, sampling depth, occurrence, and date of event.

Notes

Purpose
Main goal was to study and compare the fine-scale population structure and demographic history of three species of Antarctic sea urchins (Abatus ingens, Abatus shackletoni and Abatus philippii) in the near-shore area surrounding the Australian Reseach Sation Davis in East Antarctica. A secondary goal was to test potential impacts of pollution from the Davis Station wastewater discharge on the genetic diversity and effective population size of these species.

Data time period: 2009-10-01 to 2013-03-31

This dataset is part of a larger collection

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77.94931,-68.56563 77.94931,-68.58414 77.98756,-68.58414 77.98756,-68.56563 77.94931,-68.56563

77.968433,-68.574882

text: westlimit=77.987556; southlimit=-68.584139; eastlimit=77.94931; northlimit=-68.565625

text: uplimit=25; downlimit=0

Subjects
ADS > Automated DNA Sequencer | AMD | AMD/AU | CEOS | EARTH SCIENCE > BIOLOGICAL CLASSIFICATION > ANIMALS/INVERTEBRATES > ECHINODERMS > SEA URCHINS | EARTH SCIENCE > HUMAN DIMENSIONS > ENVIRONMENTAL IMPACTS > CONTAMINANT LEVELS/SPILLS | EARTH SCIENCE > HUMAN DIMENSIONS > ENVIRONMENTAL IMPACTS > SEWAGE DISPOSAL | EARTH SCIENCE > OCEANS > WATER QUALITY > OCEAN CONTAMINANTS | FIELD INVESTIGATION | FIELD SURVEYS | GEOGRAPHIC REGION > POLAR | LABORATORY | OUTFALL PIPE - DAVIS STATION | biota | environment | oceans |

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Other Information
Download point for the data (GET DATA)

uri : https://data.aad.gov.au/eds/4683/download

Download copies of the referenced papers - AAD Staff Only (VIEW RELATED INFORMATION > PUBLICATIONS)

uri : https://data.aad.gov.au/eds/4684/download

Identifiers
  • global : AAS_3051_AbatusMicrosatellites
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