Software

A framework to estimate nitrogen stable isotope ratio from satellite spectra

Commonwealth Scientific and Industrial Research Organisation
Yang, Jinyan ; Zhang, Haiyang ; Guo, Yiqing ; Donohue, Randall ; McVicar, Tim ; Ferrier, Simon ; Muller, Warren ; Lv, Xiaotao ; Fang, Yunting ; Wang, Xiaoguang ; Reich, Peter ; Han, Xingguo ; Mokany, Karel
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.25919/6ahe-e170&rft.title=A framework to estimate nitrogen stable isotope ratio from satellite spectra&rft.identifier=https://doi.org/10.25919/6ahe-e170&rft.publisher=Commonwealth Scientific and Industrial Research Organisation&rft.description=We describe a method to estimate δ15N from Landsat spectra. The development could inform the improvement of nitrogen cycle models and the assessments of impacts of past environmental changes. \n\nThe predicted foliar nitrogen isotope ratio (δ15N) can provide valuable insights into terrestrial nitrogen cycles and their responses to environmental changes. Maps generated using this method can fill the gaps in existing observations of δ15N suffering from spatial bias and temporal discontinuity. The data could help explain the contradictory findings across different biomes, and help build capacity to detect and attribute drivers of change. \n\n\nLineage: Briefly, the Landsat spectra were linked to ground based δ15N data with a random forest model. \n\nWe used surface reflectance from all six spectral bands of Landsat 5 and 8 from 1984-2022. Landsat data in croplands, urban areas, permanent water, ice, or bare ground were removed. \n\nEach ground-based δ15N was matched to a peak-growing season Landsat retrieval with highest green vegetation cover. A random forest model was then fitted to the ground-based δ15N and Landsat spectra. We used multiple validation methods to avoid overfitting and autocorrelation. The code is readily applicable to large scale mapping. The full description of the method and the evaluation can be found in Yang et al. (in review). Global maps derived using the framework are provided in Yang et al. (2024).\n\nFILE DESCRIPTION\nmain.R has the code to conduct the fitting and prediction; r folder has the required functions; cache folder has the processed data. Note that Landsat spectra need to be downloaded from proper sources. \n\nEXAMPLE\nAn example dataset is given with the example code in the main.R file. The dataset is a small subset of Craine et al. (2018). \n\nREFERENCES\nYang et al. (in review) Mapping the multidecadal trends of terrestrial plant nitrogen stable isotope ratios globally. \nYang et al. (2024). Global terrestrial plant nitrogen stable isotope ratio samples: 30m centroid of each 0.1 degree grid cell from 1984 to 2022. https://data.csiro.au/collection/csiro:62622\n\n\n&rft.creator=Yang, Jinyan &rft.creator=Zhang, Haiyang &rft.creator=Guo, Yiqing &rft.creator=Donohue, Randall &rft.creator=McVicar, Tim &rft.creator=Ferrier, Simon &rft.creator=Muller, Warren &rft.creator=Lv, Xiaotao &rft.creator=Fang, Yunting &rft.creator=Wang, Xiaoguang &rft.creator=Reich, Peter &rft.creator=Han, Xingguo &rft.creator=Mokany, Karel &rft.date=2024&rft.edition=v1&rft_rights=GNU General Public Licence v3.0 https://research.csiro.au/dap/licences/gnu-general-public-licence-v3-gplv3/&rft_rights=Data is accessible online and may be reused in accordance with licence conditions&rft_rights=All Rights (including copyright) CSIRO 2024.&rft_subject=Nitrogen cycles&rft_subject=nitrogen stable isotope&rft_subject=climate change&rft_subject=CO2&rft_subject=vegetation change&rft_subject=Ecological physiology&rft_subject=Ecology&rft_subject=BIOLOGICAL SCIENCES&rft_subject=Plant biochemistry&rft_subject=Plant biology&rft_subject=Geochemistry not elsewhere classified&rft_subject=Geochemistry&rft_subject=EARTH SCIENCES&rft_subject=Earth system sciences&rft_subject=Other earth sciences&rft.type=Computer Program&rft.language=English Access the software

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GNU General Public Licence v3.0
https://research.csiro.au/dap/licences/gnu-general-public-licence-v3-gplv3/

Data is accessible online and may be reused in accordance with licence conditions

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Brief description

We describe a method to estimate δ15N from Landsat spectra. The development could inform the improvement of nitrogen cycle models and the assessments of impacts of past environmental changes.

The predicted foliar nitrogen isotope ratio (δ15N) can provide valuable insights into terrestrial nitrogen cycles and their responses to environmental changes. Maps generated using this method can fill the gaps in existing observations of δ15N suffering from spatial bias and temporal discontinuity. The data could help explain the contradictory findings across different biomes, and help build capacity to detect and attribute drivers of change.


Lineage: Briefly, the Landsat spectra were linked to ground based δ15N data with a random forest model.

We used surface reflectance from all six spectral bands of Landsat 5 and 8 from 1984-2022. Landsat data in croplands, urban areas, permanent water, ice, or bare ground were removed.

Each ground-based δ15N was matched to a peak-growing season Landsat retrieval with highest green vegetation cover. A random forest model was then fitted to the ground-based δ15N and Landsat spectra. We used multiple validation methods to avoid overfitting and autocorrelation. The code is readily applicable to large scale mapping. The full description of the method and the evaluation can be found in Yang et al. (in review). Global maps derived using the framework are provided in Yang et al. (2024).

FILE DESCRIPTION
main.R has the code to conduct the fitting and prediction; r folder has the required functions; cache folder has the processed data. Note that Landsat spectra need to be downloaded from proper sources.

EXAMPLE
An example dataset is given with the example code in the main.R file. The dataset is a small subset of Craine et al. (2018).

REFERENCES
Yang et al. (in review) Mapping the multidecadal trends of terrestrial plant nitrogen stable isotope ratios globally.
Yang et al. (2024). Global terrestrial plant nitrogen stable isotope ratio samples: 30m centroid of each 0.1 degree grid cell from 1984 to 2022. https://data.csiro.au/collection/csiro:62622


Available: 2024-06-20

Data time period: 2024-05-31 to 2024-05-31