Data

Persistence and adaptation genomics collection

Monash University
Dr Alexandra Pavlova (Aggregated by) Professor Paul Sunnucks (hasOwner)
Viewed: [[ro.stat.viewed]] Cited: [[ro.stat.cited]] Accessed: [[ro.stat.accessed]]
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Non-Commercial Licence view details
CC-BY-NC-SA

Attribution-NonCommercial-ShareAlike 3.0 Australia (CC BY-NC-SA 3.0 AU)
http://creativecommons.org/licenses/by-nc-sa/3.0/au/

Some rights reserved.

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Access to this data collection may be provided under certain conditions. Contact: paul.sunnucks@monash.edu

Contact Information

Monash University Victoria 3800 Australia

Brief description

Next Generation Sequencing data, including RNA and DNA sequences generated by MiSeq, HiSeq, Ion Torrent platforms for native Australian wildlife, including freshwater fish (e.g. Murray Cod, Trout Cod, Macquarie perch, River Blackfish, Australian arid zone fish), birds (e.g. Eastern Yellow Robin), insects (e.g. mayflies, dragonflies, diving beetles)

Significance Statement

Projects of the Persistence and Adaptation Research Team engage many national and international collaborators with the common aim of improving understanding of evolutionary and ecological processes in wildlife population, to enable better management for population persistence. These projects, currently Genomics for persistence of Australian freshwater fish, Freshwater ecosystems in the Australian Arid Zone, Genomic and phenotypic adaptation in eastern yellow robin, will produce large volumes of sequencing data. Their objectives include characterisation of adaptive genetic diversity, building cost-effective genomic measures of this diversity, mapping the distribution of adaptive genetic diversity in native populations across different environments and providing practical guidelines to ensure the effective long-term management of biodiversity. To achieve these goals, we collect data for coding genes, regulatory genes and non-coding regions of the genome for many species. Few genomic data are available for native Australian biodiversity. Our data represent unique and valuable genomic resources now and into the future. Application of genomics in wildlife conservation is very new and brings many benefits, including assessment of adaptive potential of native populations, which will enable efficient management. The data will not be possible to recreate, as we have sampled at a point in time, and DNA collected for most our studies is obtained from small non-lethal tissue samples (fin clip, small blood sample) which are often used up during the research. Some samples have been collected by very expensive electrofishing, and access to remote locations requiring involving the high cost of helicopters

Created: 2012

Data time period: 2013

This dataset is part of a larger collection

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Related Publications

  • Output of Amos, J.N., Harrisson, K.A., Radford, J.Q., White, M., Newell, G., Mac Nally, R., Sunnucks, P., Pavlova, A. 2014. Species- and sex-specific connectivity effects of habitat fragmentation in a suite of woodland birds. Ecology, published online 9/01/2014.
    uri : 10.1890/13-1328.1
  • Output of Balasubramaniam, S., Mulder, R., Sunnucks, P., Pavlova, A., Melville, J. 2013. Prevalence and diversity of avian haematozoa in three Australian passerine species in fragmented habitats. Emu, published online 25/06/13.
    uri : 10.1071/MU13012
  • Output of Davis J, Pavlova A, Thompson R, Sunnucks P. (2013) Evolutionary refugia and ecological refuges: key concepts for conserving arid zone freshwater biodiversity under climate change. Global Change Biology. 19, 1970–1984.
    uri : 10.1111/gcb.12203
  • Output of Harrisson, K., Pavlova, A., Amos, J.N., Takeuchi, N., Lill, A., Radford, J.Q., Sunnucks, P., 2013. Disrupted fine-scale population processes in fragmented landscapes despite large-scale genetic connectivity for a widespread and common cooperative breeder: the superb fairy-wren (Malurus cyaneus). Journal of Animal Ecology, 82:322-333.
    uri : 10.1111/1365-2656.12007
  • Output of Harrisson, K.A., Pavlova, A., Amos, N., Radford, J., Sunnucks, P., 2013. Does reduced mobility through fragmented landscapes explain patch extinction patterns for three honeyeaters? Journal of Animal Ecology, published online October 2013.
    uri : 10.1111/1365-2656.12172
    • Show all 8 related publications

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135.3516,-14.8174 128.2324,-15.2842 123.6182,-17.6021 114.082,-21.9023 113.6426,-26.8241 119.8828,-33.578 123.9697,-33.3581 130.5176,-31.5785 133.7695,-32.1756 136.9775,-33.6146 137.9004,-32.5468 138.8232,-33.9069 139.0869,-34.8138 139.2627,-35.2456 141.9434,-36.4213 143.4814,-36.2797 145.7666,-35.7465 148.7109,-32.1756 150.3369,-28.3817 148.4912,-25.0458 148.0957,-23.2817 148.5791,-21.6983 146.6455,-19.932 141.0645,-17.644 139.7021,-17.5602 135.3516,-14.8174

131.98975,-25.61935

Subjects
Australian Arid Zone | Biological Sciences | DNA | Genetics | Genomics | Population, Ecological and Evolutionary Genetics | genotype | phenotype |

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